Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F1 I1 R1 368 332.2 13092066 97.0% 12699304 150.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009974 3,837,678 C→T intergenic (+229/‑322) RPPX_17095 → / → RPPX_17100 proteophosphoglycan precursor/cupin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0099743,837,6780CT90.1% 190.8 / 10.6 102intergenic (+229/‑322)RPPX_17095/RPPX_17100proteophosphoglycan precursor/cupin
Reads supporting (aligned to +/- strand):  ref base C (5/5);  new base T (46/45);  total (51/51)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 102 total aligned reads displayed.

CGTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGTT  >  CP009974/3837527‑3837794
                                                                                                                                                       |                                                                                                                    
cgtTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGCCCAATTTTCACCAGCCGCTCGCCGTTCCCGCTGCCAc                                                                                                                    >  1:5001480/1‑151 (MQ=9)
  ctCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCCCCCGCGAAAGGGCCCGGCCTGCCGGCCAATTTTCACCACCCGCCCACCGTTGCTGCCGCCAccc                                                                                                                  >  2:6258238/2‑150 (MQ=2)
   tccccATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACCCGCATCGTGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAc                                                                                                                    <  2:617413/148‑1 (MQ=255)
   tCACCATTGCCGCCGCTACCGGATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAc                                                                                                                    <  1:5598870/151‑1 (MQ=255)
     cccATTGCCGCCGCTACCGTATTCGCGGCTAAACCACTGCCTACACCCGCATCGAGGGCGGCACAGGCCGTTGTATGAGCGGCTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCg                                                                                                                  <  2:4082233/150‑1 (MQ=14)
     aCCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCg                                                                                                                  <  2:5272556/151‑1 (MQ=255)
     aCCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAACTCCCACCCGCCGTTCCCCCTTGCCGCCGCTAcct                                                                                                                  >  2:1399703/1‑150 (MQ=11)
      cctttGCCGCCGCCCCCGTATTCGCGGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGt                                                                                                       <  1:5449065/148‑1 (MQ=2)
      ccATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGt                                                                                                                 >  2:222924/1‑151 (MQ=255)
       cATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTa                                                                                                                <  1:4124009/151‑1 (MQ=255)
        aTTGCCGCCGCTACCGTATGCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAt                                                                                                               <  1:5350682/151‑1 (MQ=255)
         ttGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAtt                                                                                                              >  2:1039213/1‑151 (MQ=37)
          tGCCGCCGCTACCGTCTTCGCGGGTAACCCCGCTCCTCCACACGCGTCGAGGGCGGCACAGGCCGTTGTCGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc                                                                                                             <  2:4715101/151‑1 (MQ=11)
          tGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc                                                                                                             <  1:2015288/151‑1 (MQ=255)
          tGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc                                                                                                             <  1:58579/151‑1 (MQ=255)
            ccgccgCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTcgc                                                                                                           <  1:4597035/151‑1 (MQ=38)
            ccgccgCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTcgc                                                                                                           >  2:1008616/1‑151 (MQ=37)
            ccgccgCTACCGTATGCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTcgc                                                                                                           <  1:11380/151‑1 (MQ=255)
              gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACACGCGAAAGGGCCGGGCCCGCTGGCCACTGTCCACCCGCCGTTCCCCGCTGCCGCCGCTACTCTCTTcgccc                                                                                                         >  2:6348916/1‑149 (MQ=11)
               ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTCTTcgcgcg                                                                                                        >  2:1914567/1‑149 (MQ=255)
               ccgcTACCGTATTCGCGGGTAAACCCGCTCCGACACACGCATCGAGAGCGGCACAGGCCGGTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCggg                                                                                                        <  1:2375298/151‑1 (MQ=255)
                cgcgACCGTGTTCGCGGGTGAACCCGCCCCGACACCCGCAGCGAGGGCGGCGCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGt                                                                                                       <  2:1347581/151‑1 (MQ=11)
                 gcTAGCGTGTTCGCGGGTAAACCCGGTCCTACGCCCGCGTCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTa                                                                                                      <  2:2859402/151‑1 (MQ=11)
                 gcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTa                                                                                                      >  1:2583606/1‑151 (MQ=25)
                 gcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTa                                                                                                      >  1:1956297/1‑151 (MQ=37)
                 gcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCAAATTTCCACCCGCCGTTCACCCTTGCCGCCGCTACCGTATTCGCGCGTa                                                                                                      >  1:430273/1‑151 (MQ=255)
                  cTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTaa                                                                                                     <  1:3674539/151‑1 (MQ=37)
                  cTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTaa                                                                                                     >  1:556231/1‑151 (MQ=37)
                   tACCGTATTCGCGGGTAAACCCGCTCCTAGACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCCTTGCCGCCGCTACCGTATTCGCGCGTaaa                                                                                                    >  2:3848001/1‑151 (MQ=255)
                    aCCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAc                                                                                                   <  1:6135800/151‑1 (MQ=25)
                     gggTAGTCGCGGGTAGAGCCGCCCCTACACACGCATCGAGGGCGGCACATGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAcc                                                                                                  <  2:6277256/149‑1 (MQ=11)
                      ggtgtgcgcgGGTCAGCCCGCGCCTACGCCCGCGGCGAGGGTGGCACAGGCCGTCGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAccc                                                                                                 <  2:368150/145‑1 (MQ=11)
                      cGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAccc                                                                                                 >  2:2790192/1‑151 (MQ=21)
                      cGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAccc                                                                                                 >  1:4648750/1‑151 (MQ=18)
                       ggaTTCTCGGGTAAACCGGCAGCTACGCACGCGTCGAGTGGGGCACAGGCCGTTGTAGGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg                                                                                                <  1:663748/149‑1 (MQ=11)
                       gTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg                                                                                                >  2:3324864/1‑151 (MQ=25)
                        tATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCGTGCTGGGCAATTTGTACCCGCCGTTCCCCGTTGCCGCCGCTCGCTTATTCGCTAGTAAACACGc                                                                                               >  2:6266437/1‑151 (MQ=11)
                        tATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGc                                                                                               >  1:494880/1‑151 (MQ=25)
                         aTTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGcc                                                                                              >  2:6161550/1‑150 (MQ=25)
                         aTTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCt                                                                                              <  1:6532911/151‑1 (MQ=25)
                         aTTCGCGGGTAAACCCGCTCCTACACACGCATAGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCt                                                                                              <  1:4342300/151‑1 (MQ=25)
                          ttCGCGGGTCAACCCGCTCCTACCCACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCCCCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTc                                                                                             <  1:3487782/151‑1 (MQ=255)
                           tCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGCGTAAACCCGCTcc                                                                                            >  2:94817/1‑151 (MQ=21)
                           tCGCGGGTAAACCCGCACCTACACACGCACCGAGGGCGGCGCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcc                                                                                            <  1:4055056/151‑1 (MQ=255)
                            cgcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCt                                                                                           >  1:2554184/1‑151 (MQ=25)
                            cgcgGGGAAACCCGCTCCTACCCACGCGTCGAGGGCGGCCAAGGCCGGTGTAGGCGCGGGTACACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCCCCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCt                                                                                           <  1:4529213/151‑1 (MQ=11)
                             gcgGGTAAGCCCGCTCCGACAGACGCATCGAGGGCGGCACAGGCCGTTGTAGGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtg                                                                                          <  2:2699862/151‑2 (MQ=11)
                             gcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtg                                                                                          >  1:4992878/1‑150 (MQ=18)
                             gcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtg                                                                                          >  2:759672/1‑150 (MQ=21)
                             gcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtg                                                                                          >  1:2018778/1‑150 (MQ=21)
                              cgGGTAGACCCGCGGCTACACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtgc                                                                                         <  2:3494674/151‑3 (MQ=11)
                              cgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTACCGGCTAAACCCGCTCCtgc                                                                                         >  2:795607/1‑149 (MQ=255)
                               gggTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTcccgcc                                                                                        >  2:6088685/1‑147 (MQ=21)
                               gggTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtgca                                                                                        >  1:145152/1‑148 (MQ=18)
                               gggTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACACGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTATAACCGCTTCtgcc                                                                                        >  1:4694184/1‑148 (MQ=11)
                                ggTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGCAAACCCGCTCCtgccc                                                                                       >  1:1302540/1‑147 (MQ=255)
                                 gtcaaCCCGCTCCTACACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcaca                                                                                      <  2:2384516/148‑1 (MQ=255)
                                 gTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtgcccc                                                                                      >  2:2214661/1‑146 (MQ=19)
                                 gTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcaca                                                                                      >  1:1681934/1‑151 (MQ=17)
                                  tAAACCCGCTCCTACACCAGCAACCAGGGCGGCAGAGGCCGTTGTAGGCGCGGGTCCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac                                                                                     <  2:1692814/151‑1 (MQ=11)
                                  tAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac                                                                                     <  1:3517101/151‑1 (MQ=12)
                                   aaaCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACg                                                                                    >  1:1293732/1‑151 (MQ=18)
                                   aaaCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACg                                                                                    <  2:145152/151‑1 (MQ=12)
                                   aaaCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACg                                                                                    >  1:1781091/1‑151 (MQ=17)
                                    aaCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGc                                                                                   >  1:2252210/1‑151 (MQ=18)
                                     acgcGCTACTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCa                                                                                  <  2:1903253/148‑1 (MQ=255)
                                     aCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCa                                                                                  <  1:1039213/151‑1 (MQ=12)
                                      cccGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCAt                                                                                 <  1:5549551/151‑1 (MQ=12)
                                        cGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCg                                                                               >  1:4500115/1‑151 (MQ=12)
                                        cGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGGAAACCCGCTCCTGCACACGCACCg                                                                               >  2:4158643/1‑151 (MQ=255)
                                         gCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCCTCgg                                                                              >  1:2261705/1‑150 (MQ=16)
                                         gCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCgg                                                                              >  1:2425024/1‑150 (MQ=18)
                                          cTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggt                                                                             <  1:3221457/151‑3 (MQ=9)
                                           tCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggtg                                                                            <  1:954262/151‑4 (MQ=0)
                                           tCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggtg                                                                            >  2:5112501/1‑148 (MQ=9)
                                              tACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGCAAACCCTCTCCTGCACACGCATCggcggtt                                                                         >  2:2027231/1‑145 (MQ=1)
                                              tACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCCCGGGTCAGCCCGCTCCTGCACACCCATCgccggtt                                                                         >  2:6369452/1‑145 (MQ=11)
                                                                                               gcgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTgg                     <  1:3503307/151‑1 (MQ=2)
                                                                                                ggAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGc                    <  2:431783/150‑1 (MQ=2)
                                                                                                   aaGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCaa                 >  1:1970815/1‑151 (MQ=2)
                                                                                                     gggccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtt               <  2:1749107/151‑2 (MQ=11)
                                                                                                     gggccgggccGGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCAGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtt               <  2:1595238/151‑2 (MQ=2)
                                                                                                      ggccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttt              >  1:5839884/1‑149 (MQ=2)
                                                                                                      ggccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttt              >  1:2353710/1‑149 (MQ=2)
                                                                                                      ggccgggccTGCTGGCCAATTTTCACAAGCCGTTCACCGTTGCTGCCGCTAACGTATTCGCGGGTCACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttt              <  1:2068424/151‑3 (MQ=2)
                                                                                                       gccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCactttt             >  1:1316865/1‑146 (MQ=2)
                                                                                                         cgggccTGCTGGCCATTTTTCACCAGCCGTTCACCGTTGCTGCCGCGACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttca           <  2:1298231/151‑6 (MQ=2)
                                                                                                         cgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttca           >  2:6420968/1‑146 (MQ=2)
                                                                                                         cgggccTGCTGGCAAATTTTCCCCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttca           <  1:2537329/151‑6 (MQ=2)
                                                                                                           ggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAcc         <  1:5248086/151‑1 (MQ=2)
                                                                                                           ggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAcc         <  2:691263/151‑1 (MQ=2)
                                                                                                               tgttgGCCAATTTTCCCCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagcc     <  2:5927881/148‑5 (MQ=2)
                                                                                                               tgctgGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagcc     >  1:4724515/1‑147 (MQ=2)
                                                                                                                 ctgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGCAAGGGCCGGGCCTGCTGGCCCATTTCccccagccgc   >  2:6029857/1‑145 (MQ=2)
                                                                                                                 ctgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccgc   <  1:494228/151‑7 (MQ=2)
                                                                                                                  tgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccgcc  >  1:5927881/1‑144 (MQ=2)
                                                                                                                   ggCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGc                    >  2:232273/1‑132 (MQ=2)
                                                                                                                   ggCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGc                    <  1:232273/132‑1 (MQ=9)
                                                                                                                                     gctCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAgggccgggcc                           <  1:4519092/105‑1 (MQ=0)
                                                                                                                                     gctCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAgggccgggcc                           >  2:4519092/3‑107 (MQ=0)
                                                                                                                                                       |                                                                                                                    
CGTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGTT  >  CP009974/3837527‑3837794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTG  >  CP009974/3837528‑3837838
                                                                                                                                                      |                                                                                                                                                                
gctcttccgatgtGCCGCTACCGTATTGGCGGGTAAACCCGCTCCGACACGCGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCT                                                                                                                                                                  <  SRR10918232.5557721/138‑1 (MQ=39)
gctcttccgatctGCCGCTCCCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCT                                                                                                                                                                  <  SRR10918232.5557472/138‑1 (MQ=34)
GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCT                                                                                                                                                                  >  SRR10918232.56693/1‑151 (MQ=51)
GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCT                                                                                                                                                                  >  SRR10918232.6310577/1‑151 (MQ=51)
  TCACCATTGCCGCCGCTACCGGATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAC                                                                                                                                                                <  SRR10918232.5624391/151‑1 (MQ=45)
      CATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTA                                                                                                                                                            <  SRR10918232.4141852/151‑1 (MQ=36)
       ATTGCCGCCGCTACCGTATGCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAT                                                                                                                                                           <  SRR10918232.5375010/151‑1 (MQ=33)
         TGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTC                                                                                                                                                         <  SRR10918232.58756/151‑1 (MQ=31)
         TGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTC                                                                                                                                                         <  SRR10918232.2024105/151‑1 (MQ=31)
           CCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGC                                                                                                                                                       <  SRR10918232.4617259/151‑1 (MQ=31)
           CCGCCGCTACCGTATGCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGC                                                                                                                                                       <  SRR10918232.11425/151‑1 (MQ=31)
              CCGCTACCGTATTCGCGGGTAAACCCGCTCCGACACACGCATCGAGAGCGGCACAGGCCGGTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGG                                                                                                                                                    <  SRR10918232.2385360/151‑1 (MQ=29)
                GCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTA                                                                                                                                                  >  SRR10918232.1964821/1‑151 (MQ=27)
                GCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTA                                                                                                                                                  >  SRR10918232.2594550/1‑151 (MQ=27)
                GCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCAAATTTCCACCCGCCGTTCACCCTTGCCGCCGCTACCGTATTCGCGCGTA                                                                                                                                                  >  SRR10918232.431809/1‑151 (MQ=16)
                 CTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAA                                                                                                                                                 >  SRR10918232.558232/1‑151 (MQ=25)
                 CTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAA                                                                                                                                                 <  SRR10918232.3690604/151‑1 (MQ=25)
                   ACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAC                                                                                                                                               <  SRR10918232.6164182/151‑1 (MQ=21)
                     CGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCC                                                                                                                                             >  SRR10918232.4669242/1‑151 (MQ=21)
                      GTATTCGCGGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACC                                                                                                                                  >  SRR10918232.1453264/1‑151 (MQ=0)
                      GGATTCTCGGGTAAACCGGCAGCTACGCACGCGTCGAGTGGGGCACAGGCCGTTGTAGGCGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCG                                                                                                                                            <  SRR10918232.666153/151‑1 (MQ=16)
                       TATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGC                                                                                                                                           >  SRR10918232.496648/1‑151 (MQ=21)
                        ATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCT                                                                                                                                          <  SRR10918232.6563953/151‑1 (MQ=21)
                        ATTCGCGGGTAAACCCGCTCCTACACACGCATAGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCT                                                                                                                                          <  SRR10918232.4361218/151‑1 (MQ=20)
                         TTCGCGGGTCAACCCGCTCCTACCCACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCCCCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTC                                                                                                                                         <  SRR10918232.3503063/151‑1 (MQ=19)
                          TCGCGGGTAAACCCGCACCTACACACGCACCGAGGGCGGCGCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCC                                                                                                                                        <  SRR10918232.4072629/151‑1 (MQ=19)
                           CGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCT                                                                                                                                       >  SRR10918232.2564996/1‑151 (MQ=21)
                            GCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTG                                                                                                                                      >  SRR10918232.5015368/1‑151 (MQ=19)
                            GCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTG                                                                                                                                      >  SRR10918232.2027610/1‑151 (MQ=19)
                              GGGTAAACCCGCTCCTACACCCGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCA                                                                                                                                    <  SRR10918232.5900675/151‑1 (MQ=11)
                              GGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCA                                                                                                                                    >  SRR10918232.145632/1‑151 (MQ=11)
                              GGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACACGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAtaaccgcttctgcc                                                                                                                                    >  SRR10918232.4714929/1‑137 (MQ=21)
                               GGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGCAAACCCGCTCCTgccc                                                                                                                                   >  SRR10918232.1308093/1‑147 (MQ=16)
                               GGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACatgcacag                                                                                                                         >  SRR10918232.3501166/1‑143 (MQ=0)
                                GTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACA                                                                                                                                  >  SRR10918232.1689505/1‑151 (MQ=7)
                                 TAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACAC                                                                                                                                 <  SRR10918232.3532490/151‑1 (MQ=7)
                                  AAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACG                                                                                                                                >  SRR10918232.1299251/1‑151 (MQ=7)
                                  AAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACG                                                                                                                                >  SRR10918232.1789004/1‑151 (MQ=7)
                                   AACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGC                                                                                                                               >  SRR10918232.2261831/1‑151 (MQ=7)
                                    ACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCA                                                                                                                              <  SRR10918232.1043379/151‑1 (MQ=7)
                                     CCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCAT                                                                                                                             <  SRR10918232.5574852/151‑1 (MQ=7)
                                       CGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCG                                                                                                                           >  SRR10918232.4519800/1‑151 (MQ=7)
                                        GCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCctcgg                                                                                                                          >  SRR10918232.2271356/1‑146 (MQ=7)
                                        GCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGG                                                                                                                          <  SRR10918232.5243749/151‑1 (MQ=5)
                                        GCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGG                                                                                                                          >  SRR10918232.2435304/1‑151 (MQ=5)
                                         CTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgt                                                                                                                         <  SRR10918232.3235597/151‑3 (MQ=3)
                                          TCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtg                                                                                                                        <  SRR10918232.958008/151‑4 (MQ=1)
                                            CTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtggt                                                                                                                      >  SRR10918232.4427533/1‑146 (MQ=0)
                                            CTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtggt                                                                                                                      >  SRR10918232.4265114/1‑146 (MQ=0)
                                            CTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtggt                                                                                                                      >  SRR10918232.1302118/1‑146 (MQ=0)
                                            CTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtggt                                                                                                                      >  SRR10918232.111874/1‑146 (MQ=0)
                                                               ggcccaggccggtgtcgtcGCGGGTACACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGA                                                                                                   <  SRR10918232.6005336/132‑1 (MQ=28)
                                                                                                                                                      CACCGTATTCGCGGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTA  >  SRR10918232.3554808/1‑151 (MQ=0)
                                                                                                                                                      |                                                                                                                                                                
GTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTG  >  CP009974/3837528‑3837838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑