Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
404 |
265.1 |
10478538 |
96.8% |
10143224 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009974 |
3,837,678 |
C→T |
intergenic (+229/‑322) |
RPPX_17095 → / → RPPX_17100 |
proteophosphoglycan precursor/cupin |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009974 | 3,837,678 | 0 | C | T | 88.5%
| 137.1
/ 11.6
| 89 | intergenic (+229/‑322) | RPPX_17095/RPPX_17100 | proteophosphoglycan precursor/cupin |
| Reads supporting (aligned to +/- strand): ref base C (5/5); new base T (43/34); total (49/40) |
| Fisher's exact test for biased strand distribution p-value = 7.48e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGTTCACCA > CP009974/3837527‑3837799
|
cgtTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCCGCCGCTCACCGTTGCTGCCGCCAc > 1:1215071/1‑151 (MQ=2)
gtTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCGGCCGCCAcc > 1:3326191/1‑151 (MQ=2)
ttCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCGCTGTAGGAGCGGGTTCAACCGCGAAAGGGCCGGGCCTGCTGGCCAACTTTCACCACCCGCTCACCGCTGCGCCCGCCACCg > 1:3328031/1‑151 (MQ=2)
tCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAc > 1:1571295/1‑151 (MQ=255)
tCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAc > 1:846873/1‑151 (MQ=255)
tCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAc < 1:2133111/151‑1 (MQ=255)
tCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAc > 1:724072/1‑151 (MQ=255)
tCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAc < 1:4845658/151‑1 (MQ=255)
cACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAcc > 2:654549/1‑151 (MQ=255)
aCCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGGTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAACTTTCACCCGCCGTTCACCGTTGCCGCCGCGACCg > 1:4113226/1‑151 (MQ=255)
ccggcgccgccgccACCGTATTCGCGGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGt < 1:3621952/146‑1 (MQ=2)
aTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTCGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCAGCTGGCCAACTTCCACCCGCCGTTCACCGTGCCCGCCGCTACCGTAt > 1:5125939/1‑151 (MQ=14)
aTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGtct > 2:4288009/1‑149 (MQ=255)
aTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAt < 1:3580589/151‑1 (MQ=255)
ttGCCGCCGCCACCGTATTCGCGGGTACACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTaaa < 1:3261292/151‑1 (MQ=2)
tGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc < 1:4789591/151‑1 (MQ=38)
tGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc < 1:94373/151‑1 (MQ=38)
ggccgccGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTc < 2:2372494/150‑1 (MQ=255)
cgccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTCCCGTATTcgcg > 2:242322/1‑151 (MQ=255)
gccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCgg > 1:1651059/1‑151 (MQ=255)
ccgcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCggg > 1:4394294/1‑151 (MQ=38)
ccgcTACCGTATTCGCGGGTAAACCCGCTCATACAC‑TG‑ATC‑TGGGCTGCGCGGACCTCTGTAGGAGCGGGCTCACCCGCGCAAGGGCCGGGCCCGCGGGCCAATTTTCCCCAGCCGGCCCCCGTTGCTGCCGCCCCCGTCTGCCCggggca > 2:4990121/1‑148 (MQ=9)
gcTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTa < 1:340948/151‑1 (MQ=38)
tACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTaaa < 1:2919985/151‑1 (MQ=25)
tACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTaaa > 1:1269954/1‑151 (MQ=21)
tACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGCGCCCCGTTGCCGCAGCTACCGTATTCCCggggaca > 2:4349891/1‑147 (MQ=11)
tACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCCCCGTTCACCGTTGCCGCCGCTACCGTTTTCGCGGGTaaa > 1:471782/1‑151 (MQ=255)
tACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGGTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTaaa > 1:1269894/1‑151 (MQ=21)
ccGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAcc > 1:1865006/1‑151 (MQ=21)
ccGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCCTTGCCGCCGCTACCGTATTCGCGGGTAAAcc > 1:3579223/1‑151 (MQ=14)
ccGTATGCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAcc < 2:3056217/151‑1 (MQ=25)
cggaTTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAAccc < 1:4994595/148‑1 (MQ=25)
cGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCCCGTGTACAccc > 1:931763/1‑151 (MQ=255)
ggcttCGCGGGTAAACCCGCCCCTACACCCGCGTCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg < 2:2554248/148‑1 (MQ=11)
gTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCg < 1:5094900/151‑1 (MQ=25)
gTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGCTAAACCCg > 1:1715604/1‑151 (MQ=25)
tgtgcgcgGGTAAACCCGCTCCTGCAGCCGCATCGAGGGCGGCACAGGCCGGTGTAGGAGCGGGTACACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGc < 2:4730485/147‑1 (MQ=11)
gcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCGCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtg > 1:4967524/1‑150 (MQ=16)
gcgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCATTCACCGTTGCCGCCGCTACCGTTTTCGCACGTAAACCCGCAcccc > 2:1364424/1‑149 (MQ=11)
cgGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCtgc > 2:487802/1‑149 (MQ=18)
gggTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgca > 2:2367061/1‑151 (MQ=18)
gggTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCCGGTAAACCCGCTCCTgca > 1:2996441/1‑151 (MQ=9)
gTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcaca > 1:965310/1‑151 (MQ=18)
tAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac > 1:3199912/1‑151 (MQ=9)
tAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgcacac < 1:1546400/151‑1 (MQ=12)
aaaCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACg > 1:1471505/1‑151 (MQ=18)
aaaCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACg > 1:1439282/1‑151 (MQ=12)
aaaCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACg > 1:1427308/1‑151 (MQ=18)
aaCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGc > 2:1869288/1‑151 (MQ=18)
aCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCa < 2:1651059/151‑1 (MQ=12)
aCCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGACAGTTTCAACCCGCCGTTCACCGATGCCGCCGCTACCGTATTCGCGCGTAACCCCGCACCAGCACACGcc > 2:3493485/1‑150 (MQ=11)
cccGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGCAAACCCGCTCCTGCACACGCAt > 2:1456053/1‑151 (MQ=9)
ccGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATc > 1:3098481/1‑151 (MQ=18)
gCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCCTCgg > 1:4774405/1‑150 (MQ=9)
gCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCgg < 1:3742731/151‑2 (MQ=9)
cTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggt > 1:472335/1‑149 (MQ=9)
cTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggt > 2:1309753/1‑149 (MQ=2)
cTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCCCCTGCACACGCATCggg > 2:4799067/1‑149 (MQ=255)
cTCCGACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggt < 1:4761190/151‑3 (MQ=2)
tgcTACACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggtg < 1:1176478/149‑4 (MQ=11)
tcttACACCCGAGTCGAGGGCGGGACCGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTCCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggtg < 1:1180367/148‑4 (MQ=1)
tCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggtg > 2:1180267/1‑148 (MQ=9)
tCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggtg > 1:3737219/1‑148 (MQ=2)
cccTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCggtg < 1:22785/150‑4 (MQ=0)
ccTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCgccgg > 2:733193/1‑147 (MQ=12)
ccctgcgTAAGGGCCGTGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TGC‑TC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctg < 1:2796316/147‑1 (MQ=2)
aCCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAACCCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctg < 2:635998/151‑1 (MQ=2)
cccGCGAGAGGGCCGGGGCTGCTAGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTCCCGTATTCGCGAGTAAACCCACTCCTACTC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgc < 2:891279/151‑1 (MQ=2)
ccGCGAAAGGGCCGGGCCTGCTGGCCAATGTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgct < 2:1040681/151‑1 (MQ=2)
cgcgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCGCCGTTGCTGCCGCTACCGTATTCGCGTGTGAACCCGCTCCTACAC‑TG‑ATC‑TGGGCTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCctgctg < 2:771940/151‑1 (MQ=2)
gcagaaGGGCCGGGCGTGCTGGCCATTTTTCACCGGCCGTTAACCGTTGCTCCCGCTACCGTATTCGCGGGTAAACACGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTgg < 2:2876418/147‑1 (MQ=2)
cgAAAGGGCCGGGCCTGCTGGCCAATTTTCACCGGCCGCTCACAGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGc < 2:2388140/151‑1 (MQ=2)
ggaaGGGCCGGGCCTGCTGGCGAGTTTGCACCGGCCGTTCGCCGTTGCTGCCGCTACCGGATTCGCGGGTGAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGcc < 2:4362765/149‑1 (MQ=2)
gggggccgggccTGCTGGCCAATTTTCCCCCGCCGTCCACCGTTGCTGCCGCGACCGTATCCGGGGGTGGACCCGCTCCTACTC‑TGC‑TC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCaa < 2:1862363/149‑1 (MQ=2)
aaGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCaa < 2:2507681/151‑1 (MQ=2)
aGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAt < 1:1946023/151‑1 (MQ=2)
aGGGCCGGGCCTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAt < 1:54627/151‑1 (MQ=2)
gggccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtt < 2:4759379/151‑2 (MQ=11)
gggccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAtt > 1:4759379/1‑150 (MQ=2)
gggccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCGGCTGGCCCAtt > 1:3590591/1‑150 (MQ=2)
ccgggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttc < 1:374469/151‑5 (MQ=2)
gggccTGCTGGCCAATTTTCACCGGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttcac < 1:4107864/151‑7 (MQ=2)
gggccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttcac < 1:4107873/151‑7 (MQ=2)
gggccGGCTGGCCAATTTTCACCGGCCGCTCACCGTTGCTGCCGCCACCGTACTCGGGGGTAGACCCGCTCCT‑‑ACTCGGATCG‑GGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAAttttcac < 2:721161/151‑7 (MQ=2)
ggccTGCTGGCCATTTTTCACCGGCCGTGCACCGTTGCTGCCGCTACCGTAGTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAcc < 2:3480885/151‑1 (MQ=2)
gccTGCTGGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAcca > 1:4726002/1‑150 (MQ=2)
gccTGCTGGCCAATTTTCACCAGCCGCTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGGTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTTCAccc > 2:1762978/1‑151 (MQ=9)
gctgGCCAATTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TG‑ATC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTTCAccagccg > 1:4043833/1‑146 (MQ=2)
aaTTTTCACCAGCCGTTCACCGTTGCTGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACAC‑TGC‑TC‑TGGACTGCGCGGTCCTCTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCGGCCGGCCAATCTTCACCAGCCGCTCAccg > 2:2348121/1‑150 (MQ=2)
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CGTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGTTCACCA > CP009974/3837527‑3837799
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTC > CP009974/3837530‑3837835
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TCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAC > SRR10918231.850405/1‑151 (MQ=47)
TCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAC > SRR10918231.726919/1‑151 (MQ=47)
TCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAC < SRR10918231.2142683/151‑1 (MQ=47)
TCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAC > SRR10918231.1578533/1‑151 (MQ=47)
TCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTAC < SRR10918231.4868965/151‑1 (MQ=47)
ACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGGTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAACTTTCACCCGCCGTTCACCGTTGCCGCCGCGACCG > SRR10918231.4132641/1‑151 (MQ=46)
ATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTCGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCAGCTGGCCAACTTCCACCCGCCGTTCACCGTGCCCGCCGCTACCGTAT > SRR10918231.5151050/1‑151 (MQ=29)
ATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTAT < SRR10918231.3596921/151‑1 (MQ=34)
TGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTC < SRR10918231.4812579/151‑1 (MQ=31)
TGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTC < SRR10918231.94730/151‑1 (MQ=31)
GCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGG > SRR10918231.1658691/1‑151 (MQ=31)
CCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGG > SRR10918231.4415145/1‑151 (MQ=31)
GCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTA < SRR10918231.342179/151‑1 (MQ=27)
TACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAA > SRR10918231.1276055/1‑151 (MQ=23)
TACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAA < SRR10918231.2933324/151‑1 (MQ=23)
TACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCCCCGTTCACCGTTGCCGCCGCTACCGTTTTCGCGGGTAAA > SRR10918231.473478/1‑151 (MQ=22)
TACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGGTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAA > SRR10918231.1275994/1‑151 (MQ=22)
CCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACC > SRR10918231.1873404/1‑151 (MQ=21)
CCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCCTTGCCGCCGCTACCGTATTCGCGGGTAAACC > SRR10918231.3595547/1‑151 (MQ=7)
CGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCCCGTGTACACCC > SRR10918231.935775/1‑151 (MQ=20)
CGGATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCC < SRR10918231.5018782/151‑1 (MQ=21)
GTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCG < SRR10918231.5119781/151‑1 (MQ=21)
GTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGCTAAACCCG > SRR10918231.1723481/1‑151 (MQ=20)
ATTCGCGGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACA > SRR10918231.2540315/1‑151 (MQ=0)
GCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCGCAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTG > SRR10918231.4991550/1‑151 (MQ=18)
GCGGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACatgcc > SRR10918231.5171890/1‑146 (MQ=0)
GGGTAACCCCGCTCCTACACACGAACCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCA < SRR10918231.1051728/151‑1 (MQ=10)
GGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCCGGTAAACCCGCTCCTGCA > SRR10918231.3010179/1‑151 (MQ=11)
GGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACACACatgcaca > SRR10918231.455219/1‑144 (MQ=0)
GTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACA > SRR10918231.969533/1‑151 (MQ=7)
TAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACAC > SRR10918231.3214474/1‑151 (MQ=7)
TAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACAC < SRR10918231.1553516/151‑1 (MQ=7)
AAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACG > SRR10918231.1434016/1‑151 (MQ=7)
AAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACG > SRR10918231.1446032/1‑151 (MQ=7)
AAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACG > SRR10918231.1478383/1‑151 (MQ=7)
ccgcgggcacacgcaggcggcctgggtgtgccaggccgttgtcgcggcgggtggagCCGCGAAAGGGCCGGGCCGGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCA < SRR10918231.929504/95‑1 (MQ=3)
CCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATC > SRR10918231.3112629/1‑151 (MQ=7)
GCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCctcgg > SRR10918231.4797272/1‑146 (MQ=7)
GCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGG < SRR10918231.3759916/151‑1 (MQ=5)
ctccggccCACGCATGGAGCGCGGCACAGGCCGTGGTGGGGGCGGGTTCCCCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgt < SRR10918231.4783602/143‑3 (MQ=2)
CTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgt > SRR10918231.474033/1‑149 (MQ=3)
CTCCGACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgt < SRR10918231.4783980/151‑3 (MQ=3)
tcttacacccgagTCGAGGGCGGGACCGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTCCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtg < SRR10918231.1185888/138‑4 (MQ=1)
TGCTACACACGCAGCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtg < SRR10918231.1181978/151‑4 (MQ=1)
TCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtg > SRR10918231.3754374/1‑148 (MQ=1)
CCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtg < SRR10918231.22870/151‑4 (MQ=1)
CCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACCCGCATCGgtgg > SRR10918231.4804631/1‑147 (MQ=0)
CCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTGCACACGCATCGgtgg > SRR10918231.4804899/1‑147 (MQ=0)
CACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTgctcacgcagcgggggttggtc > SRR10918231.2682710/1‑129 (MQ=4)
TCCACCCGCCCTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACAgatcggaagggcacacgtctgaactccagtcactggtgaagatctcgtatgccggcttctgcttgaaaaaaaaaaaactgataggcaatttc > SRR10918231.551973/1‑59 (MQ=0)
CGCCACCGTATTCGCGGGTAAACCCGCTCCTACACA‑‑CAT‑‑‑‑‑‑‑‑GCACAGGCCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGACGGGCCTGCTGGCCAATCTCCACCCGCCGTTCACCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTC > SRR10918231.2739685/1‑151 (MQ=0)
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TCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACACGCATCGAGGGCGGCACAGGCCGTTGTAGGAGCGGGTTCACCCGCGAAAGGGCCGGGCCTGCTGGCCAATCTCCACCCGTCGTTCACCATTGCCGCCGCTACCGTATTCGCGGGTAAACCCGCTC > CP009974/3837530‑3837835
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
