Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
336 |
367.5 |
14491858 |
96.8% |
14028118 |
150.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP009974 |
5,273,059 |
Δ2,603 bp |
|
RPPX_23450–[RPPX_23460] |
RPPX_23450, RPPX_23455, [RPPX_23460] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP009974 |
5273059–5275656 |
5275661 |
6–2603 |
369 [0] |
[0] 369 |
RPPX_23450–[RPPX_23460] |
RPPX_23450,RPPX_23455,[RPPX_23460] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP009974 |
= 5273058 | 0 (0.000) | 354 (1.020) |
189/286 |
0.2 |
100% |
intergenic (‑275/+106) |
RPPX_23445/RPPX_23450 |
transporter/ATPase AAA |
| ? | CP009974 |
5275662 = |
0 (0.000) | coding (38/1266 nt) |
RPPX_23460 |
GntR family transcriptional regulator |
GATK/CNVnator alignment
N/A
