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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F1 I1 R1	368	332.2	13092066	97.0%	12699304	150.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP009974	3,486,773	Δ2,604 bp		RPPX_15555–RPPX_15560	RPPX_15555, RPPX_15560

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009974	3486773–3489370	3489376	7–2604	291 [1]	[0] 289	RPPX_15555–RPPX_15560	RPPX_15555,RPPX_15560

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009974	= 3486772	1 (0.000)	268 (0.860)	171/284	0.5	99.8%	intergenic (+358/‑204)	RPPX_15550/RPPX_15555	RNA polymerase sigma factor/integrase
*	?	CP009974	3489377 =	0 (0.000)	268 (0.860)	171/284	0.5	99.8%	intergenic (+114/+176)	RPPX_15560/RPPX_15565	ATPase AAA/ferredoxin

GATK/CNVnator alignment

N/A