Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F1 I1 R1 404 265.1 10478538 96.8% 10143224 150.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC CP009974 3,486,773 Δ2,604 bp RPPX_15555–RPPX_15560 RPPX_15555, RPPX_15560

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009974 3486773–3489369 3489376 8–2604 234 [2] [0] 231 RPPX_15555–RPPX_15560 RPPX_15555,RPPX_15560

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 = 34867722 (0.010)217 (0.870) 143/284 0.6 99.6% intergenic (+358/‑204) RPPX_15550/RPPX_15555 RNA polymerase sigma factor/integrase
?CP009974 3489377 = 0 (0.000)intergenic (+114/+176) RPPX_15560/RPPX_15565 ATPase AAA/ferredoxin

GATK/CNVnator alignment

N/A