Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F1 I1 R1 404 265.1 10478538 96.8% 10143224 150.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC MC JC CP009974 5,798,527 Δ2,603 bp intergenic (‑15/–) RPPX_25885 ← / – integrase/–

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009974 1–2595 2595 1–2595 NA [0] [0] 212 RPPX_00005–RPPX_00010 RPPX_00005,RPPX_00010
* * ÷ CP009974 5798527 5798534 8 211 [1] [0] NA RPPX_25885/– integrase/–

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009974 2596 =0 (0.000)199 (0.800) 140/284 0.7 100% intergenic (‑203/+211) RPPX_00010/RPPX_00015 integrase/peptidase S24
?CP009974 = 5798526 0 (0.000)intergenic (‑14/–) RPPX_25885/– integrase/–

GATK/CNVnator alignment

N/A