Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F224 I0 R1 1457 284.0 9290224 95.7% 8890744 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,437,638 G→T 14.6% G87G (GGC→GGA)  rplO ← 50S ribosomal subunit protein L15

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,437,6380GT14.6% 939.3 / 87.2 288G87G (GGC→GGA) rplO50S ribosomal subunit protein L15
Reads supporting (aligned to +/- strand):  ref base G (126/119);  new base T (24/19);  total (150/138)
Fisher's exact test for biased strand distribution p-value = 6.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 292 total aligned reads displayed.

GCTTCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTCTG  >  CP009273/3437489‑3437787
                                                                                                                                                     |                                                                                                                                                     
gcTTCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCg                                                                                                                                                       >  2:133826/1‑150 (MQ=255)
   tCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCt                                                                                                                                                    <  1:3764968/150‑1 (MQ=255)
     gATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTc                                                                                                                                                  <  2:1447712/150‑1 (MQ=255)
          cagcaCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACtt                                                                                                                                             >  1:730559/1‑150 (MQ=255)
              aCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACATCGCCAGCCAGGATCACTTTAGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGc                                                                                                                                         >  1:1986061/1‑150 (MQ=255)
               cGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGcc                                                                                                                                        <  1:3203809/150‑1 (MQ=255)
               cGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGcc                                                                                                                                        >  2:3606574/1‑150 (MQ=255)
               cGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGcc                                                                                                                                        >  2:186963/1‑150 (MQ=255)
                gAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCa                                                                                                                                       >  2:1170044/1‑150 (MQ=255)
                 aGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAg                                                                                                                                      <  2:3437447/150‑1 (MQ=255)
                  gcgcCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAgg                                                                                                                                     <  2:207466/150‑1 (MQ=255)
                  gcgcCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAgg                                                                                                                                     <  2:4045105/150‑1 (MQ=255)
                      cTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTcag                                                                                                                                 <  1:190466/150‑1 (MQ=255)
                       tttAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTcaga                                                                                                                                <  2:2002630/150‑1 (MQ=255)
                          aGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTcagacag                                                                                                                             >  2:2222025/1‑150 (MQ=255)
                            tAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCagacagac                                                                                                                           >  1:3677291/1‑150 (MQ=255)
                              acacGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGa                                                                                                                         >  2:2319627/1‑150 (MQ=255)
                              acacGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGa                                                                                                                         >  2:3270984/1‑150 (MQ=255)
                                acGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAAt                                                                                                                       >  2:1749507/1‑150 (MQ=255)
                                 cGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGGCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAAtt                                                                                                                      >  2:3087679/1‑150 (MQ=255)
                                  gCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAAttt                                                                                                                     <  2:4449179/150‑1 (MQ=255)
                                     ggCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCgg                                                                                                                  <  1:1969531/150‑1 (MQ=255)
                                     ggCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCgg                                                                                                                  <  1:4299398/150‑1 (MQ=255)
                                      gCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGc                                                                                                                 <  1:3327436/150‑1 (MQ=255)
                                      gCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGc                                                                                                                 <  1:1040864/150‑1 (MQ=255)
                                          cGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTa                                                                                                             <  1:979827/150‑1 (MQ=255)
                                             aCAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATc                                                                                                          <  1:1224347/150‑1 (MQ=255)
                                                gTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCgct                                                                                                       <  1:950627/150‑1 (MQ=255)
                                                  tACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCgctgc                                                                                                     >  2:4085598/1‑150 (MQ=255)
                                                   aCCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCgctgct                                                                                                    >  2:637798/1‑150 (MQ=255)
                                                    ccGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCtt                                                                                                   >  2:3467092/1‑150 (MQ=255)
                                                     cGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCttt                                                                                                  <  1:1541261/150‑1 (MQ=255)
                                                       gAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTAc                                                                                                <  1:2668984/150‑1 (MQ=255)
                                                       gAGTCGTTACTTCGCCAGCCAGGATAACTTTCGCGAACTCGATCTGGATACCGATAAATTTAGCCGCATTCAGCGTGTTCAGGTCTACTACACCGCCTACTACTTAAGCCAGGTCAGACCGACGAATATCGGCTGTAATCGCTGCTTAAc                                                                                                >  2:2915718/1‑150 (MQ=255)
                                                        aGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACg                                                                                               >  1:3331541/1‑150 (MQ=255)
                                                        aGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACg                                                                                               >  1:2085441/1‑150 (MQ=255)
                                                         gTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACga                                                                                              >  1:3516522/1‑150 (MQ=255)
                                                         gTCGTTAATTCGCAAGCCAGGATCACTTTCGCGAACTCGATCTGGATAACGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTATACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTaata                                                                                              >  1:418283/1‑147 (MQ=255)
                                                          tCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACgag                                                                                             >  1:3870401/1‑150 (MQ=255)
                                                           cGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACgaga                                                                                            >  2:4567483/1‑150 (MQ=255)
                                                             ttACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAg                                                                                          >  1:1100703/1‑150 (MQ=255)
                                                              tACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGt                                                                                         <  1:2101954/150‑1 (MQ=255)
                                                               aCTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTg                                                                                        <  2:333171/150‑1 (MQ=255)
                                                                cTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGa                                                                                       <  1:435175/150‑1 (MQ=255)
                                                                cTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGa                                                                                       <  1:2752862/150‑1 (MQ=255)
                                                                 ttCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGaa                                                                                      >  2:3950760/1‑150 (MQ=255)
                                                                  tCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAg                                                                                     <  1:348056/150‑1 (MQ=255)
                                                                  tCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAg                                                                                     <  1:3159376/150‑1 (MQ=255)
                                                                    gccagccaGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGcc                                                                                   <  1:611883/150‑1 (MQ=255)
                                                                       ttccagGATAACTTTCTCGAAATCGATCTTGATACCGATAATGTTTGCCGTTTTCAGAGTGTTCAGGTCTAATACACCGCCTTCTACTTTAGCAAGGTCTGTCATACGATTTTAGGATGTAATCGCTGCTTTACGAGAAGTGAAGCCGaa                                                                                <  1:220434/148‑1 (MQ=255)
                                                                       agccagGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTCCTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGaa                                                                                <  2:1776469/150‑1 (MQ=255)
                                                                       agccagGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGaa                                                                                >  2:4091618/1‑150 (MQ=255)
                                                                          cagGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAttt                                                                             >  1:2160548/1‑150 (MQ=255)
                                                                           agGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTc                                                                            >  2:78895/1‑150 (MQ=255)
                                                                           agGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTc                                                                            >  2:863897/1‑150 (MQ=255)
                                                                           agGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTCCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTc                                                                            <  1:3920914/150‑1 (MQ=255)
                                                                            ggATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCg                                                                           >  1:801792/1‑150 (MQ=255)
                                                                            ggATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCg                                                                           >  1:509537/1‑150 (MQ=255)
                                                                            ggATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCg                                                                           <  1:422639/150‑1 (MQ=255)
                                                                                 aCTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAga                                                                      <  1:132799/150‑1 (MQ=255)
                                                                                    ttCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacga                                                                   <  2:2178840/150‑1 (MQ=255)
                                                                                      cgagAACTCGATCTGGATACCGATAATGTGAGCCGCTTTCAGCGTGTTAAGTTCTACTACACCGGCTTCTTCTTTAGCCAGGTCAGACAGACGAATTTCGGGTGTAATCGATTCTTTTCGAGAAGTGAAGCCGTTTTTCGTATGacgacg                                                                 <  2:1547393/147‑1 (MQ=255)
                                                                                       gcgAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACgg                                                                >  1:4304654/1‑150 (MQ=255)
                                                                                        cgAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGt                                                               >  1:3508623/1‑150 (MQ=255)
                                                                                         gAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTa                                                              >  2:2571887/1‑150 (MQ=255)
                                                                                          aaCTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTAc                                                             <  1:238755/150‑1 (MQ=255)
                                                                                           aCTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACa                                                            >  1:2976922/1‑150 (MQ=255)
                                                                                               gATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAgg                                                        >  2:2596068/1‑150 (MQ=255)
                                                                                               gATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAgg                                                        >  2:1058401/1‑150 (MQ=255)
                                                                                               gATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCACTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAgg                                                        >  1:3842772/1‑150 (MQ=255)
                                                                                                aTCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGc                                                       >  1:2790836/1‑150 (MQ=255)
                                                                                                   tGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATc                                                    >  1:972094/1‑150 (MQ=255)
                                                                                                      aTACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGa                                                 <  2:2491045/150‑1 (MQ=255)
                                                                                                        aCCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGacc                                               <  2:2769522/150‑1 (MQ=255)
                                                                                                          cGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac                                             <  1:687928/150‑1 (MQ=255)
                                                                                                           gATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccacc                                            >  2:608578/1‑150 (MQ=255)
                                                                                                           gATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccacc                                            >  1:4638676/1‑150 (MQ=255)
                                                                                                            aTAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCAccc                                           <  2:3613144/150‑1 (MQ=255)
                                                                                                             tAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCt                                          >  2:4504117/1‑150 (MQ=255)
                                                                                                              aaTGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTc                                         <  1:4069890/150‑1 (MQ=255)
                                                                                                              aaTGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTc                                         <  2:777828/150‑1 (MQ=255)
                                                                                                                   tAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAAc                                    <  1:2494364/150‑1 (MQ=255)
                                                                                                                   tAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAAc                                    >  2:3227541/1‑150 (MQ=255)
                                                                                                                       cGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACcgcg                                >  2:834570/1‑150 (MQ=255)
                                                                                                                              aGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACg                         >  1:1636152/1‑150 (MQ=255)
                                                                                                                              aGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACg                         >  1:3724419/1‑150 (MQ=255)
                                                                                                                               gCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGc                        >  2:4234422/1‑150 (MQ=255)
                                                                                                                                cGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGcc                       >  1:2573946/1‑150 (MQ=255)
                                                                                                                                cGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGcc                       >  1:3096029/1‑150 (MQ=255)
                                                                                                                                     tCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGc                  >  2:3401443/1‑150 (MQ=255)
                                                                                                                                      cAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGcc                 >  2:3736679/1‑150 (MQ=255)
                                                                                                                                         gTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGa              <  1:3606574/150‑1 (MQ=255)
                                                                                                                                            tactacACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACg           <  2:1957165/150‑1 (MQ=255)
                                                                                                                                            tactacACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACg           <  2:543909/150‑1 (MQ=255)
                                                                                                                                               tacACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACgaga        >  2:2210103/1‑150 (MQ=255)
                                                                                                                                                 cacCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACt      <  1:3253453/150‑1 (MQ=255)
                                                                                                                                                 cacCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACt      >  1:2263015/1‑150 (MQ=255)
                                                                                                                                                  acCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACtt     >  1:1257007/1‑150 (MQ=255)
                                                                                                                                                   ccGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTc    <  1:1392405/150‑1 (MQ=255)
                                                                                                                                                     gCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTCTg  <  2:3869797/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GCTTCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTCTG  >  CP009273/3437489‑3437787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A