Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F181 I0 R1 1262 323.1 10297870 97.5% 10040423 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,437,638 G→T 20.9% G87G (GGC→GGA)  rplO ← 50S ribosomal subunit protein L15

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,437,6380GT20.9% 848.7 / 158.0 322G87G (GGC→GGA) rplO50S ribosomal subunit protein L15
Reads supporting (aligned to +/- strand):  ref base G (131/120);  new base T (44/25);  total (177/145)
Fisher's exact test for biased strand distribution p-value = 1.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 322 total aligned reads displayed.

TTCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTC  >  CP009273/3437491‑3437785
                                                                                                                                                   |                                                                                                                                                   
      agcagcACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTAc                                                                                                                                             >  2:1279576/1‑150 (MQ=255)
      agcagcACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTAc                                                                                                                                             >  1:1004071/1‑150 (MQ=255)
       gcagcaCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACt                                                                                                                                            <  1:3284674/150‑1 (MQ=255)
       gcagcaCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACt                                                                                                                                            <  1:1486524/150‑1 (MQ=255)
        cagcaCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACtt                                                                                                                                           >  1:539391/1‑150 (MQ=255)
          gcaCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTa                                                                                                                                         <  1:1873394/150‑1 (MQ=255)
            aCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATATGGATACCGATAATGTTAGCCGCATTCAGCGTGTTAAGGAATACAACAACTACTTCTACTTTAGc                                                                                                                                       >  2:2651235/1‑150 (MQ=255)
              gAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCa                                                                                                                                     <  2:4689319/150‑1 (MQ=255)
                   ccTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTca                                                                                                                                <  1:2008024/150‑1 (MQ=255)
                    cTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACATTAGCGAACACGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCGTCTACTTTATCCAGGTcag                                                                                                                               >  1:2621024/1‑150 (MQ=255)
                     tttAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTcaga                                                                                                                              <  2:1940728/150‑1 (MQ=255)
                      ttAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTcagac                                                                                                                             <  2:5086447/150‑1 (MQ=255)
                        aGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTcagacag                                                                                                                           <  1:3934615/150‑1 (MQ=255)
                         gTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTcagacaga                                                                                                                          >  2:2582226/1‑150 (MQ=255)
                          tAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGGGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCagacagac                                                                                                                         >  2:4389257/1‑150 (MQ=255)
                              acGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAAt                                                                                                                     >  1:2509729/1‑150 (MQ=255)
                              acGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAAt                                                                                                                     >  1:822297/1‑150 (MQ=255)
                                tcAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTATACTTTAGCCAGGTCAGACAGACGAAttt                                                                                                                   <  1:2703134/149‑1 (MQ=255)
                                gCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAAttt                                                                                                                   >  1:3191576/1‑150 (MQ=255)
                                 cAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTc                                                                                                                  >  2:4319676/1‑150 (MQ=255)
                                 cAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTc                                                                                                                  >  2:1759731/1‑150 (MQ=255)
                                  aGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCg                                                                                                                 >  2:1644443/1‑150 (MQ=255)
                                  aGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAAATTCg                                                                                                                 >  1:3413820/1‑150 (MQ=255)
                                   ggCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCgg                                                                                                                <  1:4343682/150‑1 (MQ=255)
                                    gCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACGACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGc                                                                                                               >  1:1425617/1‑150 (MQ=255)
                                     ccACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCt                                                                                                              <  2:3706594/150‑1 (MQ=255)
                                      cACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACACGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTATACTTTAGCCAGGTCAGACAGACGAATTTCGGCTg                                                                                                             >  1:193969/1‑150 (MQ=255)
                                         gAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTaa                                                                                                          >  2:2746401/1‑150 (MQ=255)
                                            cAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCg                                                                                                       <  1:2423915/150‑1 (MQ=255)
                                             aGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCgc                                                                                                      >  2:1098382/1‑150 (MQ=255)
                                               ttACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCgctg                                                                                                    >  1:1726992/1‑150 (MQ=255)
                                                 aCCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCgctgct                                                                                                  >  2:4350921/1‑150 (MQ=255)
                                                 aCCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTAGGCTGTAATCgctgct                                                                                                  >  1:3119717/1‑150 (MQ=255)
                                                      aGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACg                                                                                             >  2:412940/1‑150 (MQ=255)
                                                       gTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACga                                                                                            <  1:4261107/150‑1 (MQ=255)
                                                       gTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACga                                                                                            <  1:2953705/150‑1 (MQ=255)
                                                           ttACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAg                                                                                        >  2:1155556/1‑150 (MQ=255)
                                                            tACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGt                                                                                       <  1:3633511/150‑1 (MQ=255)
                                                               ttCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGaa                                                                                    >  2:739730/1‑150 (MQ=255)
                                                               ttCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGaa                                                                                    <  1:2283151/150‑1 (MQ=255)
                                                               ttCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGaa                                                                                    <  2:31037/150‑1 (MQ=255)
                                                                    cagccagGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGa                                                                               >  2:4182331/1‑150 (MQ=255)
                                                                     agccagGATCACTTTCGCTAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTATCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGaa                                                                              >  2:2846646/1‑150 (MQ=255)
                                                                     agccagGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGaa                                                                              <  2:1487643/150‑1 (MQ=255)
                                                                      gccagGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAt                                                                             <  1:412940/150‑1 (MQ=255)
                                                                      gccagGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAt                                                                             >  1:873006/1‑150 (MQ=255)
                                                                        cagGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAttt                                                                           >  1:2102268/1‑150 (MQ=255)
                                                                         agGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTc                                                                          >  2:3472539/1‑150 (MQ=255)
                                                                         agGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTc                                                                          <  1:1114863/150‑1 (MQ=255)
                                                                         agGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTc                                                                          <  2:1365382/150‑1 (MQ=255)
                                                                          ggATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCg                                                                         <  1:4372209/150‑1 (MQ=255)
                                                                           gATCACTTTCGCGAACTCGATCTGGATACCGATCATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCgg                                                                        >  1:4033635/1‑150 (MQ=255)
                                                                               aCTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAga                                                                    >  1:1615814/1‑150 (MQ=255)
                                                                                cTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgac                                                                   >  2:3209501/1‑150 (MQ=255)
                                                                                  ttCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacga                                                                 <  1:2833677/150‑1 (MQ=255)
                                                                                  ttCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacga                                                                 <  1:2992134/150‑1 (MQ=255)
                                                                                   tCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacgac                                                                <  1:469956/150‑1 (MQ=255)
                                                                                   tCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacgac                                                                >  2:1191678/1‑150 (MQ=255)
                                                                                     gcgAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACgg                                                              >  2:3178500/1‑150 (MQ=255)
                                                                                     gcgAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACgg                                                              >  2:4581794/1‑150 (MQ=255)
                                                                                       gAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTa                                                            >  1:4460803/1‑150 (MQ=255)
                                                                                        aaCTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTAc                                                           <  2:2037898/150‑1 (MQ=255)
                                                                                        aaCTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTAc                                                           >  2:4945406/1‑150 (MQ=255)
                                                                                         aCTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACa                                                          <  1:1073256/150‑1 (MQ=255)
                                                                                            cGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACagag                                                       <  2:3306057/150‑1 (MQ=255)
                                                                                             gATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAgg                                                      <  2:3837632/150‑1 (MQ=255)
                                                                                             gATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAgg                                                      >  1:4899060/1‑150 (MQ=255)
                                                                                              aTCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGc                                                     >  2:4866558/1‑150 (MQ=255)
                                                                                                  ggATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCt                                                 <  1:1427207/150‑1 (MQ=255)
                                                                                                   gATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTg                                                >  2:780801/1‑150 (MQ=255)
                                                                                                         gATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccacc                                          >  2:514586/1‑150 (MQ=255)
                                                                                                           tAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCt                                        >  2:1580315/1‑150 (MQ=255)
                                                                                                            aaTGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTc                                       <  2:556934/150‑1 (MQ=255)
                                                                                                            aaTGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTCCAGAGGCCTCTGACCACCCTc                                       >  2:5027671/1‑150 (MQ=255)
                                                                                                                  aGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAAcc                                 >  1:3768617/1‑150 (MQ=255)
                                                                                                                  aGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAAcc                                 >  1:3768018/1‑150 (MQ=255)
                                                                                                                   gCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACcg                                >  1:377226/1‑150 (MQ=255)
                                                                                                                    ccGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACcgc                               >  1:1220629/1‑150 (MQ=255)
                                                                                                                    ccGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACcgc                               >  2:1456141/1‑150 (MQ=255)
                                                                                                                     cGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACcgcg                              <  1:1761609/150‑1 (MQ=255)
                                                                                                                     cGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACcgcg                              <  1:4548521/150‑1 (MQ=255)
                                                                                                                      gCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGa                             >  1:764063/1‑150 (MQ=255)
                                                                                                                      gCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGa                             <  1:4797340/150‑1 (MQ=255)
                                                                                                                        tttCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACg                           <  2:363778/150‑1 (MQ=255)
                                                                                                                          tCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTa                         <  2:406771/150‑1 (MQ=255)
                                                                                                                            aGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACg                       >  2:1555730/1‑150 (MQ=255)
                                                                                                                              cGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGcc                     <  1:5051425/150‑1 (MQ=255)
                                                                                                                                tgtTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCAc                   >  1:3555766/1‑150 (MQ=255)
                                                                                                                                 gtTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCAcc                  >  2:2331620/1‑150 (MQ=255)
                                                                                                                                 gtTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCAcc                  <  1:1306187/150‑1 (MQ=255)
                                                                                                                                  ttCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCg                 <  1:1882684/150‑1 (MQ=255)
                                                                                                                                    cAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGcc               >  2:3018487/1‑150 (MQ=255)
                                                                                                                                     aGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCa              <  1:4234532/150‑1 (MQ=255)
                                                                                                                                       gTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAAATTCGGCTGTAATCGCTTCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGa            >  1:1344043/1‑150 (MQ=255)
                                                                                                                                         ctactaCACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAAc          <  1:3075651/150‑1 (MQ=255)
                                                                                                                                           actacACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACga        >  2:164404/1‑150 (MQ=255)
                                                                                                                                            ctacACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACgag       >  2:931587/1‑150 (MQ=255)
                                                                                                                                             tacACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACgaga      <  2:2368197/150‑1 (MQ=255)
                                                                                                                                                acCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACtt   <  2:822297/150‑1 (MQ=255)
                                                                                                                                                 ccGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTc  >  1:4403673/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
TTCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTC  >  CP009273/3437491‑3437785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A