Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F218 I0 R1 1506 278.7 9275112 94.5% 8764980 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,437,638 G→T 15.0% G87G (GGC→GGA)  rplO ← 50S ribosomal subunit protein L15

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,437,6380GT15.0% 894.4 / 89.0 281G87G (GGC→GGA) rplO50S ribosomal subunit protein L15
Reads supporting (aligned to +/- strand):  ref base G (115/122);  new base T (28/14);  total (145/136)
Fisher's exact test for biased strand distribution p-value = 4.35e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 285 total aligned reads displayed.

GCTTCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTCT  >  CP009273/3437489‑3437786
                                                                                                                                                     |                                                                                                                                                    
gcTTCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCg                                                                                                                                                      >  2:364033/1‑150 (MQ=255)
gcTTCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCg                                                                                                                                                      <  2:3684202/150‑1 (MQ=255)
 cTTCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGc                                                                                                                                                     >  1:2067976/1‑150 (MQ=255)
  ttCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGcc                                                                                                                                                    <  1:766548/150‑1 (MQ=255)
    cGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCAAGTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCtt                                                                                                                                                  >  1:580998/1‑150 (MQ=255)
     gATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACAACTCCTTc                                                                                                                                                 >  1:3818123/1‑150 (MQ=255)
      aTAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCt                                                                                                                                                >  2:4200526/1‑150 (MQ=255)
      aTAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCt                                                                                                                                                <  2:4322790/150‑1 (MQ=255)
        agcagcACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTAc                                                                                                                                              >  2:3381253/1‑150 (MQ=255)
        agcagcACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTAc                                                                                                                                              >  2:849273/1‑150 (MQ=255)
         gcagcaCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACt                                                                                                                                             <  1:1863434/150‑1 (MQ=255)
          cagcaCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACtt                                                                                                                                            >  2:1030625/1‑150 (MQ=255)
           agcaCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACttt                                                                                                                                           <  2:4105467/150‑1 (MQ=255)
           agcaCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACttt                                                                                                                                           <  2:1218605/150‑1 (MQ=255)
             caCGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTat                                                                                                                                         >  2:207108/1‑149 (MQ=255)
                   cgcCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATACTGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGt                                                                                                                                   >  2:1876799/1‑150 (MQ=255)
                   cgcCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGt                                                                                                                                   <  1:2855159/150‑1 (MQ=255)
                    gcCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTc                                                                                                                                  <  1:2817993/150‑1 (MQ=255)
                    gcCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTc                                                                                                                                  >  1:336065/1‑150 (MQ=255)
                     ccTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTca                                                                                                                                 <  1:810088/150‑1 (MQ=255)
                       tttAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTcaga                                                                                                                               <  2:932896/150‑1 (MQ=255)
                            tAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACGTCGCCAGCCAGGATCACTTTAGCGAACGCGATCTGGATACCGATAATTTTAGCCGCATTCAACGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCCGGTCagacagac                                                                                                                          >  1:642629/1‑150 (MQ=255)
                             aaCACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACg                                                                                                                         >  1:4455705/1‑150 (MQ=255)
                             aaCACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACACGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCGTCTACTTTAGCCAGGTCAGACAGACg                                                                                                                         >  1:1323087/1‑150 (MQ=255)
                               cacGCAGGCCAGGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGTCAGACgtt                                                                                                                       <  2:4254914/150‑3 (MQ=255)
                                acGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAAt                                                                                                                      <  1:3523625/150‑1 (MQ=255)
                                 cGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAAtt                                                                                                                     <  2:1565498/150‑1 (MQ=255)
                                  gCAGGCCACGAACAGTTACCGGAGTCTTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCATGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAAttt                                                                                                                    <  2:695578/150‑1 (MQ=255)
                                   cAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTc                                                                                                                   <  2:2427419/150‑1 (MQ=255)
                                   cAGGACACGAACAGTTAGCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTc                                                                                                                   <  1:1048685/150‑1 (MQ=255)
                                      gCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGc                                                                                                                >  2:1236724/1‑150 (MQ=255)
                                           gAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTaa                                                                                                           >  2:2893756/1‑150 (MQ=255)
                                           gAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTaa                                                                                                           <  1:3159130/150‑1 (MQ=255)
                                            aaCAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAAt                                                                                                          >  1:4465425/1‑150 (MQ=255)
                                              cAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCg                                                                                                        <  1:3076398/150‑1 (MQ=255)
                                              cAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCg                                                                                                        >  1:4614479/1‑150 (MQ=255)
                                                gTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCgct                                                                                                      <  1:3607131/150‑1 (MQ=255)
                                                gTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCgct                                                                                                      <  1:2603438/150‑1 (MQ=255)
                                                gTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCgct                                                                                                      <  1:4138329/150‑1 (MQ=255)
                                                  tACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCgctgc                                                                                                    <  1:2269611/150‑1 (MQ=255)
                                                    ccGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCtt                                                                                                  <  2:3161156/150‑1 (MQ=255)
                                                     cGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATTTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTAGGCTGTAATCGCTGCttt                                                                                                 >  1:905549/1‑150 (MQ=255)
                                                     cGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCttt                                                                                                 <  1:2363468/150‑1 (MQ=255)
                                                       gAGTCGTTACTTCGCCAGCCAGGATCACATTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTAGGCTGTAATCGCTGCTTTAc                                                                                               >  1:4106451/1‑150 (MQ=255)
                                                         gTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACga                                                                                             >  1:1348189/1‑150 (MQ=255)
                                                         gTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACga                                                                                             >  1:218311/1‑150 (MQ=255)
                                                            gTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGaa                                                                                          <  2:4382711/150‑1 (MQ=255)
                                                            gTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGaa                                                                                          <  1:1638774/150‑1 (MQ=255)
                                                             ttACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAg                                                                                         >  1:860026/1‑150 (MQ=255)
                                                              tACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGt                                                                                        <  2:3978982/150‑1 (MQ=255)
                                                                 ttCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGaa                                                                                     <  2:2545840/150‑1 (MQ=255)
                                                                  tCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAg                                                                                    <  2:462254/150‑1 (MQ=255)
                                                                      cagccagGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGa                                                                                >  1:4296177/1‑150 (MQ=255)
                                                                         ccagGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAAtt                                                                             <  1:322020/150‑1 (MQ=255)
                                                                             gATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCgg                                                                         <  2:2370331/150‑1 (MQ=255)
                                                                             gATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCgg                                                                         <  2:381620/150‑1 (MQ=255)
                                                                              aTCACTTTCGCGAACTCGATCTGGAAACCGATAATGTTAGCCGCTTACAGCGTGTTCAGGTCTACTACACCGCCTTCTACATTAGCAAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGc                                                                        >  1:1716840/1‑150 (MQ=255)
                                                                                cACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAg                                                                      >  2:1365334/1‑150 (MQ=255)
                                                                                 aCTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAga                                                                     >  2:1876720/1‑150 (MQ=255)
                                                                                   tttCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacg                                                                   <  1:1477944/150‑1 (MQ=255)
                                                                                    ttCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacga                                                                  <  1:1946311/150‑1 (MQ=255)
                                                                                     tCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAgacgac                                                                 <  1:2502970/150‑1 (MQ=255)
                                                                                        cgAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGt                                                              <  2:488445/150‑1 (MQ=255)
                                                                                        cgAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGt                                                              >  2:1713824/1‑150 (MQ=255)
                                                                                          aaCTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTAc                                                            >  2:2011413/1‑150 (MQ=255)
                                                                                                aTCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGc                                                      >  1:1575034/1‑150 (MQ=255)
                                                                                                 tCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCa                                                     <  1:1030625/150‑1 (MQ=255)
                                                                                                    ggATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCt                                                  >  2:2796640/1‑150 (MQ=255)
                                                                                                     gATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTg                                                 <  1:1568015/150‑1 (MQ=255)
                                                                                                       tACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGac                                               >  1:2442475/1‑150 (MQ=255)
                                                                                                        aCCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGacc                                              <  2:2258711/150‑1 (MQ=255)
                                                                                                        aCCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGacc                                              <  2:2772898/150‑1 (MQ=255)
                                                                                                          cGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac                                            >  1:3492427/1‑150 (MQ=255)
                                                                                                          cGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccac                                            >  1:1175014/1‑150 (MQ=255)
                                                                                                           gATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccacc                                           <  1:118751/150‑1 (MQ=255)
                                                                                                           gATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGaccacc                                           >  1:660864/1‑150 (MQ=255)
                                                                                                            aTAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCAccc                                          <  2:3314814/150‑1 (MQ=255)
                                                                                                              aaTGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTc                                        <  2:2479351/150‑1 (MQ=255)
                                                                                                                 gTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGaa                                     >  1:3735725/1‑150 (MQ=255)
                                                                                                                  ttAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGaaa                                    >  2:530326/1‑150 (MQ=255)
                                                                                                                    aGCCGCTTTCAGCGTGTTCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAAcc                                  <  1:308971/150‑1 (MQ=255)
                                                                                                                     gCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACcg                                 <  1:1872562/150‑1 (MQ=255)
                                                                                                                        gCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGa                              >  1:114091/1‑150 (MQ=255)
                                                                                                                          tttCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACg                            <  1:2974463/150‑1 (MQ=255)
                                                                                                                                cGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGcc                      <  1:1375717/150‑1 (MQ=255)
                                                                                                                                cGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGcc                      >  2:3736954/1‑150 (MQ=255)
                                                                                                                                   gtTCAGGTCTACTCCACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCAcc                   <  2:3116423/150‑1 (MQ=255)
                                                                                                                                    ttCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCg                  <  2:1958614/150‑1 (MQ=255)
                                                                                                                                     tCAGGTCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGc                 <  2:2757130/150‑1 (MQ=255)
                                                                                                                                       aGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCa               >  2:3874776/1‑150 (MQ=255)
                                                                                                                                          tCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGaa            <  2:2670514/150‑1 (MQ=255)
                                                                                                                                          tCTACTACACCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGaa            <  2:1443215/150‑1 (MQ=255)
                                                                                                                                          tCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGaa            >  1:4391995/1‑150 (MQ=255)
                                                                                                                                             actacACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACga         >  1:2052733/1‑150 (MQ=255)
                                                                                                                                                acacCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGACACCGCGACGTACGCCACCGCCAGAACGAGAc      <  1:3926433/150‑1 (MQ=255)
                                                                                                                                                 cacCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTTCGCCACCGCCAGAACGAGACt     >  2:4328131/1‑150 (MQ=255)
                                                                                                                                                 cacCTCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACt     >  2:4018451/1‑150 (MQ=255)
                                                                                                                                                  acCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACtt    >  2:1841672/1‑150 (MQ=255)
                                                                                                                                                   ccGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTc   >  2:658268/1‑150 (MQ=255)
                                                                                                                                                    cGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTCt  >  2:2605764/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GCTTCGATAGCAGCACGAGCGCCTTTAGTAACACGCAGGCCACGAACAGTTACCGGAGTCGTTACTTCGCCAGCCAGGATCACTTTCGCGAACTCGATCTGGATACCGATAATGTTAGCCGCTTTCAGCGTGTTCAGGTCTACTACACCGCCTTCTACTTTAGCCAGGTCAGACAGACGAATTTCGGCTGTAATCGCTGCTTTACGAGAAGTGAAGCCGAATTTCGGCAGACGACGGTACAGAGGCATCTGACCACCCTCGAAACCGCGACGTACGCCACCGCCAGAACGAGACTTCT  >  CP009273/3437489‑3437786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A