Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F54 I0 R1 640 319.5 10493376 95.3% 10000187 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,371,372 G→T 19.5% I65I (ATC→ATA)  rpsI ← 30S ribosomal subunit protein S9

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,371,3720GT19.5% 739.4 / 141.6 281I65I (ATC→ATA) rpsI30S ribosomal subunit protein S9
Reads supporting (aligned to +/- strand):  ref base G (113/113);  new base T (29/25);  total (143/138)
Fisher's exact test for biased strand distribution p-value = 6.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 286 total aligned reads displayed.

TTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAGCTGC  >  CP009273/3371223‑3371521
                                                                                                                                                     |                                                                                                                                                     
ttCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTg                                                                                                                                                       <  1:118218/150‑1 (MQ=255)
  cTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGAt                                                                                                                                                     <  2:434350/150‑1 (MQ=255)
   ttACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATg                                                                                                                                                    <  1:4470848/150‑1 (MQ=255)
    tACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGt                                                                                                                                                   >  2:1677375/1‑150 (MQ=255)
    tACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGt                                                                                                                                                   >  1:3557581/1‑150 (MQ=255)
      cGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTAc                                                                                                                                                 <  2:1899266/150‑1 (MQ=255)
       gTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACa                                                                                                                                                >  1:3098821/1‑150 (MQ=255)
       gTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTATAACGGTGATGTACa                                                                                                                                                >  1:734994/1‑150 (MQ=255)
        ttCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAg                                                                                                                                               <  2:5099482/150‑1 (MQ=255)
        ttCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAg                                                                                                                                               >  2:4083546/1‑150 (MQ=255)
          cAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGt                                                                                                                                             <  2:2090936/150‑1 (MQ=255)
             ccTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCa                                                                                                                                          <  2:2939580/150‑1 (MQ=255)
             ccTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCa                                                                                                                                          >  2:762063/1‑150 (MQ=255)
              cTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAg                                                                                                                                         >  1:3341201/1‑150 (MQ=255)
              cTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAg                                                                                                                                         >  1:3241024/1‑150 (MQ=255)
                   gAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTtct                                                                                                                                    <  1:4211690/150‑1 (MQ=255)
                   gAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTtct                                                                                                                                    >  1:1009291/1‑150 (MQ=255)
                   gAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTtct                                                                                                                                    >  1:1009429/1‑150 (MQ=255)
                   gAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTtct                                                                                                                                    <  1:1603351/150‑1 (MQ=255)
                   gAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTtct                                                                                                                                    >  2:5056218/1‑150 (MQ=255)
                   gAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTtct                                                                                                                                    >  1:1864149/1‑150 (MQ=255)
                    aGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTtctc                                                                                                                                   >  1:1998864/1‑150 (MQ=255)
                      cGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCaa                                                                                                                                 <  1:2720548/150‑1 (MQ=255)
                       gTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAAc                                                                                                                                >  1:175743/1‑150 (MQ=255)
                       gTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAAc                                                                                                                                >  1:637735/1‑150 (MQ=255)
                       gTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAAc                                                                                                                                >  1:5182968/1‑150 (MQ=255)
                          aCGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCAt                                                                                                                             >  1:4936558/1‑150 (MQ=255)
                           cGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGTGACTCGTCGTATACCATCAGAGCGCGGGAGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCAATAACGGTAATGTACAGGTCCAGTATCTCAACCATg                                                                                                                            >  1:4026395/1‑150 (MQ=255)
                                aaCGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGAc                                                                                                                       <  2:332669/150‑1 (MQ=255)
                                  cGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCa                                                                                                                     <  1:1489444/150‑1 (MQ=255)
                                  cGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCa                                                                                                                     >  2:4514284/1‑150 (MQ=255)
                                      gCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTc                                                                                                                 <  2:4480885/150‑1 (MQ=255)
                                       ccAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTcc                                                                                                                <  2:1051322/150‑1 (MQ=255)
                                        cAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCa                                                                                                               <  2:4652976/150‑1 (MQ=255)
                                        cAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCa                                                                                                               >  2:150131/1‑150 (MQ=255)
                                           cTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCg                                                                                                            >  2:164175/1‑150 (MQ=255)
                                             ttACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGATATACCACCACCTTTAACGGTTATGTACAGGTCAAGTTTCTCAACCATGTCGACCAGTTCCAGCGGc                                                                                                          >  2:3245323/1‑150 (MQ=255)
                                             ttACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGc                                                                                                          >  2:4625634/1‑150 (MQ=255)
                                                  cAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACg                                                                                                     >  2:3976481/1‑150 (MQ=255)
                                                  cAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACg                                                                                                     >  2:1746267/1‑150 (MQ=255)
                                                       cAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTa                                                                                                <  1:2458445/150‑1 (MQ=255)
                                                           aCGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCAt                                                                                            <  2:1645733/150‑1 (MQ=255)
                                                            cGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATg                                                                                           <  2:2261806/150‑1 (MQ=255)
                                                              cAGGGACTCGTCGTATTCCAACAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATAACACCACCTTTAACGGGGATGTACAGGTCCAGTTTCTCAACCATGTCTACCAGTACCAGCGGCTGACGAACTACCATGCg                                                                                         >  2:3552732/1‑150 (MQ=255)
                                                                 ggACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGc                                                                                      <  2:3957831/150‑1 (MQ=255)
                                                                   aCTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAg                                                                                    <  2:1407503/150‑1 (MQ=255)
                                                                    cTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGt                                                                                   <  2:3903210/150‑1 (MQ=255)
                                                                      cgtcgtATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGttt                                                                                 <  2:3756827/150‑1 (MQ=255)
                                                                       gtcgtATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTc                                                                                >  1:1353053/1‑150 (MQ=255)
                                                                       gtcgtATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTc                                                                                >  1:973332/1‑150 (MQ=255)
                                                                        tcgtATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGACCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTATCa                                                                               >  1:3714197/1‑150 (MQ=255)
                                                                         cgtATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCAc                                                                              <  1:143882/150‑1 (MQ=255)
                                                                            aTTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCCGAGATACCACCACCTTTACCGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGAc                                                                           <  2:3025479/150‑1 (MQ=255)
                                                                                 aTCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAg                                                                      <  2:1795077/150‑1 (MQ=255)
                                                                                 aTCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGGTCCAGCGGCTGACGAACTACCATGCGGGCAGTGTCACGACCGAAg                                                                      >  2:4906938/1‑150 (MQ=255)
                                                                                   cAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTa                                                                    >  1:2992458/1‑150 (MQ=255)
                                                                                    agagCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTAc                                                                   <  2:1018008/150‑1 (MQ=255)
                                                                                    agagCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTAc                                                                   <  2:4147023/150‑1 (MQ=255)
                                                                                         gcgGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTc                                                              <  1:4999075/150‑1 (MQ=255)
                                                                                           gggTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCa                                                            >  2:2657533/1‑150 (MQ=255)
                                                                                             gTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCaga                                                          <  1:4263326/150‑1 (MQ=255)
                                                                                             gTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCaga                                                          <  1:4683867/150‑1 (MQ=255)
                                                                                              tGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCagag                                                         <  1:4009477/150‑1 (MQ=255)
                                                                                                 tACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAAc                                                      <  1:5134281/150‑1 (MQ=255)
                                                                                                    cGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgtt                                                   <  1:3435908/150‑1 (MQ=255)
                                                                                                     gTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttg                                                  >  2:4816288/1‑150 (MQ=255)
                                                                                                      tGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttgg                                                 <  2:3364038/150‑1 (MQ=255)
                                                                                                       gACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttggt                                                <  2:1953648/150‑1 (MQ=255)
                                                                                                       gACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGTCGAACTACCATGCGGGCAGTTTCTCGACCGAAGTACTGTTCCAGAGAACgttggt                                                <  2:2500988/150‑1 (MQ=255)
                                                                                                       gACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttggt                                                <  1:2368110/150‑1 (MQ=255)
                                                                                                        aCGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttggtt                                               <  1:3213163/150‑1 (MQ=255)
                                                                                                                cACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGa                                       >  2:2290571/1‑150 (MQ=255)
                                                                                                                 aCCAGCCTGACCAGAGATACCACCACCTTTCACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCTGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAt                                      <  1:546664/150‑1 (MQ=255)
                                                                                                                 aCCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAt                                      <  2:1181155/150‑1 (MQ=255)
                                                                                                                    aGCCTGACCAGAGCTACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAtttt                                   <  1:2496451/150‑1 (MQ=255)
                                                                                                                    aGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAtttt                                   <  1:2905761/150‑1 (MQ=255)
                                                                                                                    aGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAtttt                                   >  1:1802411/1‑150 (MQ=255)
                                                                                                                    aGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAtttt                                   >  2:4383575/1‑150 (MQ=255)
                                                                                                                       cTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTAcc                                >  2:4709862/1‑150 (MQ=255)
                                                                                                                         gACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGACCGTTGGTTGATTACGATTTTACCGt                              >  2:4690849/1‑150 (MQ=255)
                                                                                                                         gACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGAGTACGATTTTACCGt                              >  1:667451/1‑150 (MQ=255)
                                                                                                                         gACCAGAGATACCACCACCGTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGGTGGTGGATTACGATTTTACCGt                              >  1:2972014/1‑150 (MQ=255)
                                                                                                                            cAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGc                           >  2:4289263/1‑150 (MQ=255)
                                                                                                                               agaTACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCg                        <  1:204798/150‑1 (MQ=255)
                                                                                                                                 aTACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGt                      >  1:3977140/1‑150 (MQ=255)
                                                                                                                                   accaccaacTTTTACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGttt                    <  2:3587590/150‑1 (MQ=255)
                                                                                                                                        caccTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTtgatga               <  1:4558925/150‑1 (MQ=255)
                                                                                                                                           cTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGaaaa            >  1:4355360/1‑150 (MQ=255)
                                                                                                                                           cTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGaaaa            >  2:854912/1‑150 (MQ=255)
                                                                                                                                           cTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGaaaa            >  2:536128/1‑150 (MQ=255)
                                                                                                                                            tttAACGGTGATGTACCGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAAc           >  2:2854893/1‑150 (MQ=255)
                                                                                                                                             ttAACTGTGATGTACAGGTCCAGTTACTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAAcg          <  2:2727320/150‑1 (MQ=255)
                                                                                                                                                aCGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGa       >  2:3480755/1‑150 (MQ=255)
                                                                                                                                                aCGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGa       >  1:2172124/1‑150 (MQ=255)
                                                                                                                                                 cGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCTGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGGTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAg      <  2:5182968/150‑1 (MQ=255)
                                                                                                                                                 cGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGGTGGTTGATTACGATTTTACCGTTGCCCGGTGTGAGGAACACGCGAg      >  2:3936343/1‑150 (MQ=255)
                                                                                                                                                  ggTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAGc     >  1:4085036/1‑150 (MQ=255)
                                                                                                                                                  ggTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGGTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAGc     >  2:3967638/1‑150 (MQ=255)
                                                                                                                                                   gTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAGCt    <  2:4599048/150‑1 (MQ=255)
                                                                                                                                                     gATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACAATTTTACCGTTGCCCGGTTTGATGAAAACGCGAGCTGc  >  2:219178/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAGCTGC  >  CP009273/3371223‑3371521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A