Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F52 I0 R1
|
779 |
320.1 |
10410758 |
96.6% |
10056792 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,371,372 |
G→T |
12.7% |
I65I (ATC→ATA) |
rpsI ← |
30S ribosomal subunit protein S9 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,371,372 | 0 | G | T | 12.7%
| 988.0
/ 93.9
| 284 | I65I (ATC→ATA) | rpsI | 30S ribosomal subunit protein S9 |
| Reads supporting (aligned to +/- strand): ref base G (107/141); new base T (17/19); total (124/160) |
| Fisher's exact test for biased strand distribution p-value = 7.20e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
Only 100 of 288 total aligned reads displayed.
TCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAGCTG > CP009273/3371224‑3371520
|
tCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTg < 1:3098076/149‑1 (MQ=255)
tCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTg > 2:4302788/1‑149 (MQ=255)
ttACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGAt < 1:3637783/149‑1 (MQ=255)
tACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATg < 2:1753973/149‑1 (MQ=255)
ttCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACa > 1:2530350/1‑149 (MQ=255)
tCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAg < 1:4303548/149‑1 (MQ=255)
cTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCa > 2:4260690/1‑149 (MQ=255)
cGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGttt > 1:4326233/1‑149 (MQ=255)
gAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTtc < 1:507913/149‑1 (MQ=255)
aGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTtct < 2:2367102/149‑1 (MQ=255)
gTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCaa < 1:2833769/149‑1 (MQ=255)
tCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAAc < 2:1346970/149‑1 (MQ=255)
aCGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCa > 2:4513686/1‑149 (MQ=255)
cGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCAt < 1:2324513/149‑1 (MQ=255)
aGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGt < 2:4266042/149‑1 (MQ=255)
gTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTc < 2:3851556/149‑1 (MQ=255)
gTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTc < 2:769851/149‑1 (MQ=255)
tAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCg > 1:1743877/1‑149 (MQ=255)
aaCGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGa > 1:4842329/1‑149 (MQ=255)
aaGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAg > 2:748793/1‑149 (MQ=255)
aaGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAg > 2:3770684/1‑149 (MQ=255)
aGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGt > 2:5083435/1‑149 (MQ=255)
cAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTcc > 1:3367950/1‑149 (MQ=255)
tttACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCg > 2:3865868/1‑149 (MQ=255)
tttACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCg < 1:2726395/149‑1 (MQ=255)
tttACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCg < 1:2891731/149‑1 (MQ=255)
tttACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGACGACCAGTTCCAGCg > 1:1535304/1‑149 (MQ=255)
tACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGc < 1:986271/149‑1 (MQ=255)
ttCAGAACGCAGGTACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGaa < 2:4605541/149‑1 (MQ=255)
ttCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGaa > 2:1206190/1‑149 (MQ=255)
ttCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGaa < 1:3788306/149‑1 (MQ=255)
aGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTa > 1:4549472/1‑149 (MQ=255)
gAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTAc < 2:2859821/149‑1 (MQ=255)
aaCGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTAcc < 2:2444073/149‑1 (MQ=255)
aCGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCa < 1:3512774/149‑1 (MQ=255)
gCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATg < 1:721531/149‑1 (MQ=255)
aGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCg < 2:2504149/149‑1 (MQ=255)
gggACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCgg > 2:1903039/1‑149 (MQ=255)
ggACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCggg < 1:579676/149‑1 (MQ=255)
gACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGc < 2:937874/149‑1 (MQ=255)
tcgtcgTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGt < 1:934073/149‑1 (MQ=255)
cgtcgtATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGtt < 2:2698579/149‑1 (MQ=255)
tATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCTCCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACg > 2:199494/1‑149 (MQ=255)
tATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCTCCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACg > 2:2803245/1‑149 (MQ=255)
tATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACg > 1:1059127/1‑149 (MQ=255)
tATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGAGGGCAGTTTCACg > 1:4574580/1‑149 (MQ=255)
aTTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGa < 2:3549397/149‑1 (MQ=255)
ccATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCg < 1:736154/149‑1 (MQ=255)
ccATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCg > 2:4151423/1‑149 (MQ=255)
cAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGt < 2:2250398/149‑1 (MQ=255)
gagCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTAc < 1:526764/149‑1 (MQ=255)
gagCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTAc > 1:662837/1‑149 (MQ=255)
gagCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTAc > 2:3010763/1‑149 (MQ=255)
gagCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTAc > 2:3620772/1‑149 (MQ=255)
agCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCATTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCTTGCGGGCAGTTTCACGACCGAAGTACt < 1:1772283/149‑1 (MQ=255)
agCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACt < 1:4261982/149‑1 (MQ=255)
gcgcGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTg > 2:2205740/1‑149 (MQ=255)
gggTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTcc < 2:4989229/149‑1 (MQ=255)
gATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCagag < 1:394204/149‑1 (MQ=255)
aTACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAgaga > 2:1179948/1‑149 (MQ=255)
tACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGaa < 2:886066/149‑1 (MQ=255)
tACCGTGACGGATCGCACCAGCCTGACCAGAGAGACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGaa < 2:4778904/149‑1 (MQ=255)
aCCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAAc < 2:1704559/149‑1 (MQ=255)
ccGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCCCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACg < 1:2256641/149‑1 (MQ=255)
cGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttggtt > 1:3336952/1‑149 (MQ=255)
ggATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACgttggttg > 2:4972610/1‑149 (MQ=255)
aTCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGAt < 2:5114433/149‑1 (MQ=255)
aCCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGa > 1:4119301/1‑149 (MQ=255)
ccAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAt < 2:4556085/149‑1 (MQ=255)
aGCCTGACCAGATATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAttt < 2:3364874/149‑1 (MQ=255)
gCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGAtttt > 1:1704313/1‑149 (MQ=255)
ccTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGACCGGTGGGTGATTACGATTTTa > 1:1684322/1‑149 (MQ=255)
cTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTAc > 1:3312466/1‑149 (MQ=255)
cTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTAc > 1:4503516/1‑149 (MQ=255)
tGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTAcc > 2:4547260/1‑149 (MQ=255)
tGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTAcc < 1:2870063/149‑1 (MQ=255)
tGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTAcc > 2:4353100/1‑149 (MQ=255)
ccAGAGATACCACCACCTTTAACGGTGATGTCCAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGtt > 2:649605/1‑149 (MQ=255)
gagaTACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGcc > 2:3209351/1‑149 (MQ=255)
agaTACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGccc > 1:1357858/1‑149 (MQ=255)
tACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCTTGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGt < 2:4628699/149‑1 (MQ=255)
tACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGt < 1:3269693/149‑1 (MQ=255)
tACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGt < 1:4731792/149‑1 (MQ=255)
tACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGt > 1:4377019/1‑149 (MQ=255)
accaccaccTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGtt < 2:4422674/149‑1 (MQ=255)
ccaccaccTTTAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGttt < 2:2559071/149‑1 (MQ=255)
ccaccaccTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGttt > 2:1469058/1‑149 (MQ=255)
ccaccaccTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGttt < 1:1095775/149‑1 (MQ=255)
accaccTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTtga < 1:465695/149‑1 (MQ=255)
ccaccTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTtgat > 1:1966950/1‑149 (MQ=255)
tttcccGGTGATGTACAGGTCCAGTTTCTCAACCCTGTCGACCAGGTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGaaaa < 1:4963052/144‑1 (MQ=255)
tttAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGaaaa > 2:198848/1‑149 (MQ=255)
ttAACGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAAc < 1:1826342/149‑1 (MQ=255)
tAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAAcg < 2:1552415/149‑1 (MQ=255)
aaCGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAAcgc < 1:318653/149‑1 (MQ=255)
aCGGTTATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAAcgcg > 1:948872/1‑149 (MQ=255)
aCGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAAcgcg > 2:665164/1‑149 (MQ=255)
cGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGa < 2:530418/149‑1 (MQ=255)
gTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAGc < 1:1124619/149‑1 (MQ=255)
tGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTGGATTTGGATTTTACCGTTGCCCGGTGTGATGAAAACGCGAGCt > 1:353458/1‑149 (MQ=255)
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TCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGCAGTTCAGAACGCAGGGACTCGTCGTATTCCATCAGAGCGCGGGTGATACCGTGACGGATCGCACCAGCCTGACCAGAGATACCACCACCTTTAACGGTGATGTACAGGTCCAGTTTCTCAACCATGTCGACCAGTTCCAGCGGCTGACGAACTACCATGCGGGCAGTTTCACGACCGAAGTACTGTTCCAGAGAACGTTGGTTGATTACGATTTTACCGTTGCCCGGTTTGATGAAAACGCGAGCTG > CP009273/3371224‑3371520
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
