Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F202 I0 R1	1397	275.7	9089454	95.2%	8653160	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	4,217,818	G→T	47.5%	V54F (GTT→TTT)	yjbB →	putative Na+/Pi‑cotransporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	4,217,818	0	G	T	47.5%	159.9 / inf	267	V54F (GTT→TTT)	yjbB	putative Na+/Pi‑cotransporter
Reads supporting (aligned to +/- strand): ref base G (61/79); new base T (44/83); total (105/162)
Fisher's exact test for biased strand distribution p-value = 1.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 271 total aligned reads displayed.

TGCTTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGAC  >  CP009273/4217669‑4217967

tgctTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCg                                                                                                                                                       <  1:2868355/150‑1 (MQ=255)

  ctTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGtt                                                                                                                                                     <  1:166536/150‑1 (MQ=255)

  ctTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGtt                                                                                                                                                     >  2:156346/1‑150 (MQ=255)

           cTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTg                                                                                                                                            >  1:626096/1‑150 (MQ=255)

           cTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTg                                                                                                                                            >  1:3506945/1‑150 (MQ=255)

           cTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTg                                                                                                                                            >  1:1507347/1‑150 (MQ=255)

            tttCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTgg                                                                                                                                           <  2:2391254/150‑1 (MQ=255)

              tCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTa                                                                                                                                         <  1:2106905/150‑1 (MQ=255)

                   cGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACagag                                                                                                                                    >  1:2640470/1‑150 (MQ=255)

                   cGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACAGGTACagag                                                                                                                                    >  2:1020161/1‑150 (MQ=255)

                      cGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAg                                                                                                                                 <  1:187347/150‑1 (MQ=255)

                      cGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAg                                                                                                                                 <  1:3974470/150‑1 (MQ=255)

                      cGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGACGTTACCGCACTGGTACAGAGCAg                                                                                                                                 <  2:2993319/150‑1 (MQ=255)

                        cccTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTa                                                                                                                               >  1:2552957/1‑150 (MQ=255)

                        cccTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTa                                                                                                                               >  2:2797999/1‑150 (MQ=255)

                         ccTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTaa                                                                                                                              >  1:1458043/1‑150 (MQ=255)

                            gctgGTCTGGGGGACTCATCTTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGc                                                                                                                           <  1:4068914/150‑1 (MQ=255)

                              tgGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGcca                                                                                                                         >  2:4174795/1‑150 (MQ=255)

                              tgGTCTGGGGGACTCATATTGTTCGAACCGGCGTAAGGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGcca                                                                                                                         <  1:180011/150‑1 (MQ=255)

                               ggTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGccac                                                                                                                        <  2:3846060/150‑1 (MQ=255)

                                gTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGccacc                                                                                                                       <  1:167462/150‑1 (MQ=255)

                                gTCTGGGGGACTCATAGTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCATTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGccacc                                                                                                                       <  2:2993468/150‑1 (MQ=255)

                                  cTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGccaccac                                                                                                                     <  1:802591/150‑1 (MQ=255)

                                   tGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGccaccacc                                                                                                                    >  2:2156832/1‑150 (MQ=255)

                                    gggggACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAATAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGccaccacca                                                                                                                   >  2:3918604/1‑150 (MQ=255)

                                      gggACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATg                                                                                                                 >  2:4498011/1‑150 (MQ=255)

                                      gggACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATg                                                                                                                 >  2:2002665/1‑150 (MQ=255)

                                        gACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCt                                                                                                               <  2:932443/150‑1 (MQ=255)

                                          cTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTgg                                                                                                             <  2:2500998/150‑1 (MQ=255)

                                           tCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGt                                                                                                            >  2:1318656/1‑150 (MQ=255)

                                            cATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTg                                                                                                           >  1:3577500/1‑150 (MQ=255)

                                            cATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTg                                                                                                           >  1:4540109/1‑150 (MQ=255)

                                              tatTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGAc                                                                                                         <  2:774313/150‑1 (MQ=255)

                                              tatTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGAc                                                                                                         <  2:774325/150‑1 (MQ=255)

                                               atTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGAcc                                                                                                        >  1:875723/1‑150 (MQ=255)

                                                ttGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAGAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCt                                                                                                       <  2:537368/150‑1 (MQ=255)

                                                ttGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCTCCACCATGCTGGTGACCt                                                                                                       <  2:1768175/150‑1 (MQ=255)

                                                ttGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCt                                                                                                       <  2:1084905/150‑1 (MQ=255)

                                                ttGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCt                                                                                                       <  1:277844/150‑1 (MQ=255)

                                                ttGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCt                                                                                                       <  1:3394617/150‑1 (MQ=255)

                                                 tGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTc                                                                                                      <  2:3617666/150‑1 (MQ=255)

                                                  gTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCg                                                                                                     <  1:830209/150‑1 (MQ=255)

                                                   ttCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGt                                                                                                    <  2:1498106/150‑1 (MQ=255)

                                                          cGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGc                                                                                             >  2:2858813/1‑150 (MQ=255)

                                                           ggCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCt                                                                                            <  2:2784488/150‑1 (MQ=255)

                                                              gTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAg                                                                                         >  2:3381084/1‑150 (MQ=255)

                                                              gTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAg                                                                                         >  1:107087/1‑150 (MQ=255)

                                                              gTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAg                                                                                         >  1:2409738/1‑150 (MQ=255)

                                                               tAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAgg                                                                                        >  2:1099672/1‑150 (MQ=255)

                                                                 aTGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGAt                                                                                      >  2:590112/1‑150 (MQ=255)

                                                                      cgTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGt                                                                                 >  1:1698937/1‑150 (MQ=255)

                                                                         cTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGc                                                                              <  2:4052170/150‑1 (MQ=255)

                                                                           tCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGccc                                                                            <  1:4119902/150‑1 (MQ=255)

                                                                            cGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCt                                                                           <  2:516611/150‑1 (MQ=255)

                                                                             ggCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTc                                                                          <  2:4139604/150‑1 (MQ=255)

                                                                                  gcgTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCAcc                                                                     <  2:311926/150‑1 (MQ=255)

                                                                                   cgTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCg                                                                    >  2:3655889/1‑150 (MQ=255)

                                                                                   cgTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCg                                                                    >  1:2312264/1‑150 (MQ=255)

                                                                                   cgTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCg                                                                    >  1:2312378/1‑150 (MQ=255)

                                                                                    gTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCgg                                                                   >  1:917162/1‑150 (MQ=255)

                                                                                     tttGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGc                                                                  >  1:3954221/1‑150 (MQ=255)

                                                                                      ttGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGct                                                                 <  2:4104396/150‑1 (MQ=255)

                                                                                      ttGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGct                                                                 <  2:3866025/150‑1 (MQ=255)

                                                                                        gCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGctag                                                               <  1:3772893/150‑3 (MQ=255)

                                                                                          gTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTgg                                                             <  1:2183312/150‑1 (MQ=255)

                                                                                           tACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGt                                                            >  2:1498898/1‑150 (MQ=255)

                                                                                           tACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGt                                                            >  2:1499036/1‑150 (MQ=255)

                                                                                                    tAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTACCACCTCCTCAGGTCATTGTGCt                                                   >  2:2916403/1‑150 (MQ=255)

                                                                                                     aGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTg                                                  <  1:286797/150‑1 (MQ=255)

                                                                                                     aGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTg                                                  <  1:2585765/150‑1 (MQ=255)

                                                                                                        cGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGt                                               >  1:3142420/1‑150 (MQ=255)

                                                                                                        cGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGt                                               >  2:417523/1‑150 (MQ=255)

                                                                                                        cGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGt                                               >  2:2553404/1‑150 (MQ=255)

                                                                                                         ggAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTg                                              >  1:2303753/1‑150 (MQ=255)

                                                                                                             cGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGa                                          <  1:3249938/150‑1 (MQ=255)

                                                                                                              gTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGAt                                         >  1:3955367/1‑150 (MQ=255)

                                                                                                                 gAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTc                                      >  2:1752388/1‑150 (MQ=255)

                                                                                                                   aaaaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCgg                                    <  1:2178383/150‑1 (MQ=255)

                                                                                                                   aaaaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCgg                                    <  1:2177609/150‑1 (MQ=255)

                                                                                                                   aaaaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCgg                                    <  1:2977368/150‑1 (MQ=255)

                                                                                                                    aaaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCggg                                   >  1:4516017/1‑150 (MQ=255)

                                                                                                                     aaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGa                                  <  1:3498707/150‑1 (MQ=255)

                                                                                                                     aaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGa                                  <  2:1818320/150‑1 (MQ=255)

                                                                                                                      aaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGAc                                 <  1:2265756/150‑1 (MQ=255)

                                                                                                                      aaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGAc                                 <  1:1224087/150‑1 (MQ=255)

                                                                                                                       aaGCCGCTCGCCTTTTGCGCGGGGTTCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACg                                <  2:964446/150‑1 (MQ=255)

                                                                                                                        aGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGACCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACgg                               >  1:4463767/1‑150 (MQ=255)

                                                                                                                            gCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCt                           <  1:3918604/150‑1 (MQ=255)

                                                                                                                             cTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTa                          <  2:3765405/150‑1 (MQ=255)

                                                                                                                             cTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTa                          <  2:3505500/150‑1 (MQ=255)

                                                                                                                               cGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAAt                        <  1:821568/150‑1 (MQ=255)

                                                                                                                               cGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAAt                        <  1:821372/150‑1 (MQ=255)

                                                                                                                               cGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAAt                        <  1:1074177/150‑1 (MQ=255)

                                                                                                                                        cgcgGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTAt               >  2:529365/1‑150 (MQ=255)

                                                                                                                                         gcgGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTAtt              >  1:176136/1‑150 (MQ=255)

                                                                                                                                         gcgGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTAtt              >  2:3444559/1‑150 (MQ=255)

                                                                                                                                           ggggATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATtct            <  2:2463158/150‑1 (MQ=255)

                                                                                                                                           ggggATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATtct            <  2:1906663/150‑1 (MQ=255)

                                                                                                                                               aTCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCAcc        <  2:3508685/150‑1 (MQ=255)

                                                                                                                                                tCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCt       <  2:399542/150‑1 (MQ=255)

TGCTTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGAC  >  CP009273/4217669‑4217967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A