Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F218 I0 R1 1506 278.7 9275112 94.5% 8764980 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,217,818 G→T 18.2% V54F (GTT→TTT)  yjbB → putative Na+/Pi‑cotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,217,8180GT18.2% 820.8 / 110.4 272V54F (GTT→TTT) yjbBputative Na+/Pi‑cotransporter
Reads supporting (aligned to +/- strand):  ref base G (108/114);  new base T (28/22);  total (136/136)
Fisher's exact test for biased strand distribution p-value = 4.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 280 total aligned reads displayed.

TGCTTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGAC  >  CP009273/4217669‑4217967
                                                                                                                                                     |                                                                                                                                                     
tgctTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCg                                                                                                                                                       >  2:1990305/1‑150 (MQ=255)
tgctTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCg                                                                                                                                                       >  1:1439701/1‑150 (MQ=255)
tgctTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCg                                                                                                                                                       >  2:2134217/1‑150 (MQ=255)
 gctTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGt                                                                                                                                                      >  1:3226624/1‑150 (MQ=255)
  ctacACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGtt                                                                                                                                                     <  2:2395397/147‑1 (MQ=255)
     cACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTAcc                                                                                                                                                  <  2:3417323/150‑1 (MQ=255)
      aCCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCg                                                                                                                                                 >  1:2685488/1‑150 (MQ=255)
        cTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCa                                                                                                                                               <  2:19661/150‑1 (MQ=255)
         tGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCAc                                                                                                                                              >  1:4464535/1‑150 (MQ=255)
            tttCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTgg                                                                                                                                           <  1:2564895/150‑1 (MQ=255)
                  ccGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTACTGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACaga                                                                                                                                     <  1:2271314/150‑1 (MQ=255)
                    gTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGc                                                                                                                                   >  2:4398319/1‑150 (MQ=255)
                    gTCGCCCTGCTGGTCTGGGGGACTCATAGTGTTCGAACCGGCGTAATGCGCGTCGTCGGCGCGCGTGTGCGTACTGTCCTTAGCCGGCGCGTCGAAAAAAAGCCGCTCGCCTGTTGCGCGGGGATCGGCGGTACCGCCCTGGGACCGAGc                                                                                                                                   >  2:3749973/1‑150 (MQ=255)
                       gCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGt                                                                                                                                <  1:2512885/150‑1 (MQ=255)
                       gCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGt                                                                                                                                <  2:1123146/150‑1 (MQ=255)
                         ccTGCTCCTCTGGGGGACTCATATTGTTCGAACAGGCGTAATGCTAGTCTTCGGCGCTCGATTTCGTACTGTCCTTATCAGGAGCTTCGAAAAAAAGACGCTCGAAATTTTCGCGGGGATCGGCGATACCGCACTGGTACAGAGCAGTaa                                                                                                                              >  2:4152115/1‑150 (MQ=255)
                          ctgctgGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAAt                                                                                                                             >  2:1534052/1‑150 (MQ=255)
                           tgctgGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCTTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATg                                                                                                                            >  2:2745532/1‑150 (MQ=255)
                           tgctgGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATg                                                                                                                            <  2:3776415/150‑1 (MQ=255)
                            gctgGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGGGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGTAAAAGAGCCGCTAGCCTTTTGCGCGGGGATCGGCGTTACCGCTGTGGTCGAGAGCAGTAATGc                                                                                                                           >  2:2626749/1‑150 (MQ=255)
                              tgGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGcca                                                                                                                         >  2:2004976/1‑150 (MQ=255)
                               ggTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGccac                                                                                                                        >  1:3483422/1‑150 (MQ=255)
                                     ggggACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCAt                                                                                                                  >  2:220108/1‑150 (MQ=255)
                                      gggACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATg                                                                                                                 <  1:2018899/150‑1 (MQ=255)
                                      gggACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATg                                                                                                                 <  1:2793103/150‑1 (MQ=255)
                                      gggACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATg                                                                                                                 <  1:1976065/150‑1 (MQ=255)
                                       ggACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGc                                                                                                                >  1:2985623/1‑150 (MQ=255)
                                        gACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCt                                                                                                               <  2:2356369/150‑1 (MQ=255)
                                          cTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTgg                                                                                                             >  1:3970906/1‑150 (MQ=255)
                                                        aCCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTc                                                                                               >  2:185636/1‑150 (MQ=255)
                                                        aCCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTc                                                                                               >  1:660816/1‑150 (MQ=255)
                                                           ggCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCt                                                                                            >  1:1080890/1‑150 (MQ=255)
                                                            gCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTc                                                                                           <  2:2989459/150‑1 (MQ=255)
                                                             cGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCa                                                                                          <  2:1787936/150‑1 (MQ=255)
                                                             cGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCa                                                                                          <  2:3061679/150‑1 (MQ=255)
                                                              gTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAg                                                                                         >  1:4354424/1‑150 (MQ=255)
                                                              gTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAg                                                                                         >  2:2110692/1‑150 (MQ=255)
                                                                aaTGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGa                                                                                       >  2:432177/1‑150 (MQ=255)
                                                                 aTGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGAt                                                                                      <  2:4180802/150‑1 (MQ=255)
                                                                  tGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATc                                                                                     >  2:3625706/1‑150 (MQ=255)
                                                                    cgcgTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTg                                                                                   <  1:449469/150‑1 (MQ=255)
                                                                      cgTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGt                                                                                 <  1:4157928/150‑1 (MQ=255)
                                                                             ggCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTc                                                                          <  1:401006/150‑1 (MQ=255)
                                                                                gcgcgTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCa                                                                       >  2:1087868/1‑150 (MQ=255)
                                                                                gcgcgTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCa                                                                       >  1:1867972/1‑150 (MQ=255)
                                                                                 cgcgTTTGCGTACGGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCAc                                                                      <  1:3554918/150‑1 (MQ=255)
                                                                                  gcgTTTGCGTACGGTCCTGAGCCGGAGCGTCGAACAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACATCGTTTGTCGCTCAGGATCTGGTTGCCCTCGCAcc                                                                     <  2:777183/150‑1 (MQ=255)
                                                                                    gTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCgg                                                                   >  1:232426/1‑150 (MQ=255)
                                                                                     tttGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGc                                                                  >  2:1980155/1‑150 (MQ=255)
                                                                                         cGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTg                                                              >  2:4380688/1‑150 (MQ=255)
                                                                                          gTACGGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTgg                                                             <  2:4095350/150‑1 (MQ=255)
                                                                                                  cTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATtgtg                                                     >  1:838926/1‑150 (MQ=255)
                                                                                                    tAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCt                                                   <  1:465448/150‑1 (MQ=255)
                                                                                                    tAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCt                                                   <  1:465473/150‑1 (MQ=255)
                                                                                                     aGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTg                                                  <  2:4516581/150‑1 (MQ=255)
                                                                                                        cGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGt                                               >  1:1539017/1‑150 (MQ=255)
                                                                                                        cGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGt                                               >  1:2088148/1‑150 (MQ=255)
                                                                                                        cGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGt                                               >  1:4378403/1‑150 (MQ=255)
                                                                                                         ggAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTg                                              >  2:3338047/1‑150 (MQ=255)
                                                                                                         ggAGCATCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTg                                              >  2:3065743/1‑150 (MQ=255)
                                                                                                          gAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGc                                             >  1:3333442/1‑150 (MQ=255)
                                                                                                          gAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGc                                             <  2:2517581/150‑1 (MQ=255)
                                                                                                           agagTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCa                                            <  1:3290516/147‑1 (MQ=255)
                                                                                                              gTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGAt                                         >  2:1060113/1‑150 (MQ=255)
                                                                                                               tCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATg                                        <  1:891888/150‑1 (MQ=255)
                                                                                                                cGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGt                                       <  2:2564137/150‑1 (MQ=255)
                                                                                                                cGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGt                                       <  1:3414786/150‑1 (MQ=255)
                                                                                                                   aaaaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCgg                                    >  1:1554588/1‑150 (MQ=255)
                                                                                                                    aaaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCggg                                   <  1:1113266/150‑1 (MQ=255)
                                                                                                                    aaaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCggg                                   <  1:2411441/150‑1 (MQ=255)
                                                                                                                    aaaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCggg                                   >  2:3682082/1‑150 (MQ=255)
                                                                                                                     aaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGa                                  >  1:2160098/1‑150 (MQ=255)
                                                                                                                     aaaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGa                                  >  2:3893647/1‑150 (MQ=255)
                                                                                                                      aaaGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGAc                                 >  1:1212424/1‑150 (MQ=255)
                                                                                                                           cGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGgcgc                            <  1:2370414/150‑1 (MQ=255)
                                                                                                                            gCTCGCCTTTTGCGCGGGGATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCt                           >  1:3963186/1‑150 (MQ=255)
                                                                                                                               cGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAAt                        <  2:838926/150‑1 (MQ=255)
                                                                                                                               cGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAAt                        >  1:24723/1‑150 (MQ=255)
                                                                                                                                gCCTTTTGCGCGGGGATCGGCTTTTCCGCACTGGTACACTGCAGTAATGCCACCACCATGCTGGTGACCTCCTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATg                       >  2:3275355/1‑150 (MQ=255)
                                                                                                                                 ccTTTTGCGCGGGGATCGGCGTTCCCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATgg                      <  1:3990699/150‑1 (MQ=255)
                                                                                                                                 ccTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATgg                      <  1:2675681/150‑1 (MQ=255)
                                                                                                                                  cTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGgc                     <  2:1375139/150‑1 (MQ=255)
                                                                                                                                  cTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGgc                     <  2:2578330/150‑1 (MQ=255)
                                                                                                                                   ttttGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGgcg                    >  1:3096110/1‑150 (MQ=255)
                                                                                                                                      tGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGt                 <  2:606135/150‑1 (MQ=255)
                                                                                                                                         gcgGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTAtt              <  2:4196861/150‑1 (MQ=255)
                                                                                                                                          cgGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATtc             >  2:1585137/1‑150 (MQ=255)
                                                                                                                                          cgGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATtc             <  1:1016102/150‑1 (MQ=255)
                                                                                                                                          cgGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATtc             >  1:3584461/1‑150 (MQ=255)
                                                                                                                                           ggggATCGGCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATtct            >  2:3990042/1‑150 (MQ=255)
                                                                                                                                           ggggATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATtct            >  1:460484/1‑150 (MQ=255)
                                                                                                                                           ggggATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATtct            <  1:4087407/150‑1 (MQ=255)
                                                                                                                                            gggATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATtctc           <  2:3793952/150‑1 (MQ=255)
                                                                                                                                            gggATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATtctc           >  1:369084/1‑150 (MQ=255)
                                                                                                                                                  ggCTTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTc     <  2:1325021/150‑1 (MQ=255)
                                                                                                                                                  ggCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTc     <  1:4547089/150‑1 (MQ=255)
                                                                                                                                                  ggCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTc     <  2:2685488/150‑1 (MQ=255)
                                                                                                                                                  ggCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTc     <  2:3156165/150‑1 (MQ=255)
                                                                                                                                                   gCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCg    <  1:2234522/150‑1 (MQ=255)
                                                                                                                                                     gTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGAc  >  2:3249528/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TGCTTCACCTGCTTTCTGCCGTCGCCCTGCTGGTCTGGGGGACTCATATTGTTCGAACCGGCGTAATGCGCGTCTTCGGCGCGCGTTTGCGTACTGTCCTTAGCCGGAGCGTCGAAAAAAAGCCGCTCGCCTTTTGCGCGGGGATCGGCGTTACCGCACTGGTACAGAGCAGTAATGCCACCACCATGCTGGTGACCTCGTTTGTCGCTCAGGATCTGGTAGCCCTCGCACCGGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGAC  >  CP009273/4217669‑4217967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A