Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F309 I0 R1 1697 197.2 6627756 95.7% 6342762 147.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,751,135 G→T 12.1% S18* (TCA→TAA)  yiaY ← putative Fe‑containing alcohol dehydrogenase, Pfam00465 family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,751,1350GT12.1% 6350.0 / inf 1960S18* (TCA→TAA) yiaYputative Fe‑containing alcohol dehydrogenase, Pfam00465 family
Reads supporting (aligned to +/- strand):  ref base G (950/769);  new base T (117/124);  total (1067/893)
Fisher's exact test for biased strand distribution p-value = 5.32e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.26e-01

Only 100 of 1982 total aligned reads displayed.

CCATCATAAATAACGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCTA  >  CP009273/3750988‑3751282
                                                                                                                                                   |                                                                                                                                                   
    catAAATAACGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATc                                                                                                                                                 >  1:304924/1‑148 (MQ=255)
    catAAATAACGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATc                                                                                                                                                 >  1:1910105/1‑148 (MQ=255)
      taaataaCGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAg                                                                                                                                               >  1:2589049/1‑148 (MQ=255)
       aaataaCGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAgc                                                                                                                                              >  2:690252/1‑148 (MQ=255)
       aaataaCGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAgc                                                                                                                                              >  2:240237/1‑148 (MQ=255)
       aaataaCGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAgc                                                                                                                                              >  2:2006955/1‑148 (MQ=255)
         ataaCGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAgcgc                                                                                                                                            <  2:148865/148‑1 (MQ=255)
          taaCGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATTAATCAGCGcc                                                                                                                                           >  2:2733925/1‑148 (MQ=255)
          taaCGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGcc                                                                                                                                           >  2:3287105/1‑148 (MQ=255)
           aaCGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATTAATCAGCGCCg                                                                                                                                          >  1:954294/1‑148 (MQ=255)
            aCGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGa                                                                                                                                         >  1:2362269/1‑148 (MQ=255)
             cGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGAt                                                                                                                                        <  2:1004619/148‑1 (MQ=255)
             cGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGAt                                                                                                                                        >  1:90497/1‑148 (MQ=255)
              gCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATTAATCAGCGCCGATg                                                                                                                                       <  1:1973456/148‑1 (MQ=255)
                 aaaaaTATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCACTGAATCAGCGCCGATGACa                                                                                                                                    >  1:794549/1‑148 (MQ=255)
                 aaaaaTATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATTAATCAGCGCCGATGACa                                                                                                                                    >  1:107920/1‑148 (MQ=255)
                 aaaaaTATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACa                                                                                                                                    <  1:1270345/148‑1 (MQ=255)
                     atatTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTca                                                                                                                                <  1:506282/148‑1 (MQ=255)
                         tGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGa                                                                                                                            >  1:1005471/1‑148 (MQ=255)
                          gCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGNACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTAAATGAATCAGCGCCGATGACATTCACAGaa                                                                                                                           <  1:1679239/148‑1 (MQ=255)
                             ttcttcCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGa                                                                                                                        >  2:1128320/1‑148 (MQ=255)
                             ttcttcCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGa                                                                                                                        >  1:2505432/1‑148 (MQ=255)
                              tcttcCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATTAATCAGCGCCGATGACATTCACAGAAGGaa                                                                                                                       >  1:329915/1‑148 (MQ=255)
                              tcttcCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGaa                                                                                                                       >  1:1045127/1‑148 (MQ=255)
                              tcttcCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGaa                                                                                                                       >  1:1139484/1‑148 (MQ=255)
                                 tcCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATaa                                                                                                                    >  2:204786/1‑148 (MQ=255)
                                 tcCAGTGCTTTTTGCACATCGCCCGCCATACATAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATaa                                                                                                                    <  1:3152578/148‑1 (MQ=255)
                                   cAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAg                                                                                                                  <  2:2651950/148‑1 (MQ=255)
                                    aGTGCTTTTTGCACATCGCCAGCCATACATAATTTCGTTAACATATTGTCAGTCAAAATTAAGTTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGa                                                                                                                 <  1:2687654/148‑1 (MQ=255)
                                      tGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATTAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAAc                                                                                                               >  1:1549483/1‑148 (MQ=255)
                                      tGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAAc                                                                                                               >  2:160033/1‑148 (MQ=255)
                                      tGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAAc                                                                                                               >  1:610496/1‑148 (MQ=255)
                                        cTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTTTCAGTGACAATTAAGGTACGTGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGt                                                                                                             <  2:3070353/148‑1 (MQ=255)
                                           tttGCACATCGCCCGCCATACATATTTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATTAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGa                                                                                                          <  2:291811/148‑1 (MQ=255)
                                             tGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAg                                                                                                        <  2:889048/148‑1 (MQ=255)
                                             tGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAg                                                                                                        <  2:824910/148‑1 (MQ=255)
                                             tGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAg                                                                                                        <  1:2902200/148‑1 (MQ=255)
                                                 caTCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGGACGGGTAACTCCATAATCTGCCATCATCTTCATTGCCTCAGTCAAGGAATCAGCGCCGATGACATTCACAGAAGGAAGAAAGAACGTTGAAGCTGc                                                                                                    >  1:120207/1‑148 (MQ=255)
                                                      cccgccATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATaa                                                                                               <  1:2248600/148‑1 (MQ=255)
                                                              aCCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTcc                                                                                       >  2:2597978/1‑148 (MQ=255)
                                                                cTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTg                                                                                     >  1:1357780/1‑148 (MQ=255)
                                                                  aaTTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGaa                                                                                   <  1:2637466/148‑1 (MQ=255)
                                                                    tttCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGACAg                                                                                 >  2:1738238/1‑148 (MQ=255)
                                                                     ttCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAgt                                                                                >  1:2034070/1‑148 (MQ=255)
                                                                     ttCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAgt                                                                                >  2:2208118/1‑148 (MQ=255)
                                                                      tctttAACATTTTGTCTGTGAAATTTAAGGTTGGGGTAAATCCATAATCTGATTTCATATTAATTGAATCAGTATTTTAATCAGCGCCGATGACATTCACAGAATGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAgtg                                                                               <  1:754572/145‑1 (MQ=255)
                                                                         ttAACATATTGTCATTGACAATTAATGTACGGTTAAATCCATAATCTGCCATCATATTCATTGCATCATTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTaa                                                                            <  1:1770215/148‑1 (MQ=255)
                                                                          tAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTaaa                                                                           >  2:2800034/1‑148 (MQ=255)
                                                                           aaCATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATTAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTaaaa                                                                          <  1:1322347/148‑1 (MQ=255)
                                                                            aCATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTaaaaa                                                                         <  2:1675399/148‑1 (MQ=255)
                                                                               tatTGTCAGTGACAATTTATGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCAACAGTCAATGAATAAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAgg                                                                      <  1:2858401/148‑1 (MQ=255)
                                                                               tatTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAgg                                                                      >  1:3208284/1‑148 (MQ=255)
                                                                                atTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAggg                                                                     >  2:2870835/1‑148 (MQ=255)
                                                                                atTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAggg                                                                     >  2:2271648/1‑148 (MQ=255)
                                                                                  tGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAgggcg                                                                   >  2:745294/1‑148 (MQ=255)
                                                                                  tGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAgg                                                                      <  1:308876/145‑1 (MQ=255)
                                                                                    tCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATTAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAggg                                                                     <  1:2793245/144‑1 (MQ=255)
                                                                                               tAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGa                                                      >  2:339988/1‑148 (MQ=255)
                                                                                                 aGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAgg                                                    <  1:2953538/148‑1 (MQ=255)
                                                                                                 aGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAgg                                                    <  2:538009/148‑1 (MQ=255)
                                                                                                 aGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAgg                                                    <  2:1869498/148‑1 (MQ=255)
                                                                                                   gTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGAt                                                  >  2:934161/1‑148 (MQ=255)
                                                                                                   gTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGAt                                                  <  1:216982/148‑1 (MQ=255)
                                                                                                      cGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGAtttt                                               >  2:1070235/1‑148 (MQ=255)
                                                                                                        ggTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCa                                             >  2:3215855/1‑148 (MQ=255)
                                                                                                         gTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCAt                                            >  2:441445/1‑148 (MQ=255)
                                                                                                         gTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCAt                                            <  1:2081558/148‑1 (MQ=255)
                                                                                                          tAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATTAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCAtt                                           >  2:297730/1‑148 (MQ=255)
                                                                                                          tAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCAtt                                           <  1:1606158/148‑1 (MQ=255)
                                                                                                          tAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCAtt                                           <  1:360123/148‑1 (MQ=255)
                                                                                                           aaaTCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTc                                          >  2:2356898/1‑148 (MQ=255)
                                                                                                           aaaTCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTc                                          >  1:651998/1‑148 (MQ=255)
                                                                                                           aaaTCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAACGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTc                                          <  2:3033387/148‑1 (MQ=255)
                                                                                                            aaTCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCg                                         >  1:2304542/1‑148 (MQ=255)
                                                                                                                 aTAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAat                                    <  2:1356956/148‑1 (MQ=255)
                                                                                                                    aTCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATg                                 <  2:619113/148‑1 (MQ=255)
                                                                                                                    aTCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATg                                 <  2:2445959/148‑1 (MQ=255)
                                                                                                                          catcatATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGt                           >  1:1835134/1‑148 (MQ=255)
                                                                                                                           atcatATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGta                          <  2:1549807/148‑1 (MQ=255)
                                                                                                                               tatTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGtattat                      <  1:3005659/148‑1 (MQ=255)
                                                                                                                                atTCATTGCATCAGTCAATTAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTatgatt                     >  2:1959708/1‑148 (MQ=255)
                                                                                                                                  tCATTGCATCAGTCAATTAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGa                   >  1:4300/1‑148 (MQ=255)
                                                                                                                                  tCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGa                   >  1:1402517/1‑148 (MQ=255)
                                                                                                                                    aTTGCATCAGTCAATTAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTACAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGAtt                 >  2:2112454/1‑148 (MQ=255)
                                                                                                                                     ttGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTa                <  2:1311226/148‑1 (MQ=255)
                                                                                                                                      tGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTAt               >  1:1465099/1‑148 (MQ=255)
                                                                                                                                      tGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTAt               <  2:1255288/148‑1 (MQ=255)
                                                                                                                                         aTCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTCAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGAGCAGGATTCTTGATTATCaa            >  2:2549279/1‑148 (MQ=255)
                                                                                                                                           cAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCaaaa          <  1:564478/148‑1 (MQ=255)
                                                                                                                                            aGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAAt         >  1:40549/1‑148 (MQ=255)
                                                                                                                                              tCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTa       >  1:858997/1‑148 (MQ=255)
                                                                                                                                                aaTGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAAt     <  1:2724738/148‑1 (MQ=255)
                                                                                                                                                 aTGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATc    >  2:2161306/1‑148 (MQ=255)
                                                                                                                                                  tGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCt   >  1:2442780/1‑148 (MQ=255)
                                                                                                                                                  tGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCt   <  2:390265/148‑1 (MQ=255)
                                                                                                                                                  tGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCt   >  2:1194108/1‑148 (MQ=255)
                                                                                                                                                  tGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCt   <  2:1445894/148‑1 (MQ=255)
                                                                                                                                                  tGAATCAGCGCCGATGACATTAACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCt   >  2:3135824/1‑148 (MQ=255)
                                                                                                                                                  tGAATCAGCGCCGATGACATTAACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCt   >  2:1805857/1‑148 (MQ=255)
                                                                                                                                                   gAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCta  <  1:697389/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
CCATCATAAATAACGCTAAAAATATTGCGTTCTTCCAGTGCTTTTTGCACATCGCCCGCCATACCTAATTTCGTTAACATATTGTCAGTGACAATTAAGGTACGGGTAAATCCATAATCTGCCATCATATTCATTGCATCAGTCAATGAATCAGCGCCGATGACATTCACAGAAGGAATAAAGAACGTTGAAGCTGCCATAACACACTCCTGAAAGTGTAAAAAAGGGCGGGCAGCTTACTGAGGATTTTCATTCGAAAATATGATCAGTATTATTGATTATCAAAATTAATCTA  >  CP009273/3750988‑3751282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A