Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F142 I0 R1 859 274.6 8723680 96.4% 8409627 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,241,633 C→T 14.6% pseudogene (745/1323 nt) yjbI → pseudogene, SopA‑related, pentapeptide repeats‑containing

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,241,6330CT14.6% 448.8 / 58.0 157pseudogene (745/1323 nt)yjbIpseudogene, SopA‑related, pentapeptide repeats‑containing
Reads supporting (aligned to +/- strand):  ref base C (71/63);  new base T (13/10);  total (84/73)
Fisher's exact test for biased strand distribution p-value = 8.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01

Only 100 of 158 total aligned reads displayed.

CATTGCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATAACAA  >  CP009273/4241484‑4241781
                                                                                                                                                     |                                                                                                                                                    
cATTGCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATAc                                                                                                                                                      >  1:1558587/1‑150 (MQ=255)
    gCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAg                                                                                                                                                  <  2:2119440/150‑1 (MQ=255)
    gCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAg                                                                                                                                                  >  2:2239191/1‑150 (MQ=255)
     ccAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGt                                                                                                                                                 <  1:3392809/150‑1 (MQ=255)
     ccAGATAATGAAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGt                                                                                                                                                 <  1:3391300/150‑1 (MQ=255)
      cAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGtt                                                                                                                                                <  1:3196790/150‑1 (MQ=255)
       aGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTta                                                                                                                                               >  1:334818/1‑150 (MQ=255)
        gATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTtat                                                                                                                                              <  1:4007490/150‑1 (MQ=255)
            aTGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATcc                                                                                                                                          <  1:3142131/150‑1 (MQ=255)
            aTGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATcc                                                                                                                                          <  1:3142076/150‑1 (MQ=255)
                 aTGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCAtt                                                                                                                                       >  1:1958269/1‑148 (MQ=255)
                 aTGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCAtt                                                                                                                                       <  2:1958269/148‑1 (MQ=255)
                    atatTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCtgat                                                                                                                                  >  2:1080628/1‑150 (MQ=255)
                    atatTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCtgat                                                                                                                                  <  1:3143266/150‑1 (MQ=255)
                    atatTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCtgat                                                                                                                                  <  2:3410583/150‑1 (MQ=255)
                         gAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGa                                                                                                                             >  1:3510058/1‑150 (MQ=255)
                               cGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACaa                                                                                                                       <  1:2052593/150‑1 (MQ=255)
                               cGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACaa                                                                                                                       <  1:2052966/150‑1 (MQ=255)
                               cGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACaa                                                                                                                       <  1:2117147/150‑1 (MQ=255)
                                gTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAg                                                                                                                      >  1:2217725/1‑150 (MQ=255)
                                 ttCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGt                                                                                                                     <  1:768755/150‑1 (MQ=255)
                                   cTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTc                                                                                                                   <  1:4033891/150‑1 (MQ=255)
                                          tAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGAtt                                                                                                            >  1:952251/1‑150 (MQ=255)
                                          tAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGAtt                                                                                                            >  1:952299/1‑150 (MQ=255)
                                           aaaaCTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGAttt                                                                                                           <  1:2920707/150‑1 (MQ=255)
                                           aaaaCTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGAttt                                                                                                           >  1:3924213/1‑150 (MQ=255)
                                             aaCTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTa                                                                                                         >  1:2112105/1‑150 (MQ=255)
                                             aaCTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTa                                                                                                         >  1:2112101/1‑150 (MQ=255)
                                              aCTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTAt                                                                                                        >  1:264145/1‑150 (MQ=255)
                                                 ggTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCg                                                                                                     >  1:3899549/1‑150 (MQ=255)
                                                       gCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACa                                                                                               >  2:3052032/1‑150 (MQ=255)
                                                             aaaaaTACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGAtt                                                                                         <  2:1812603/150‑1 (MQ=255)
                                                                   aCTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGa                                                                                   <  1:3978418/150‑1 (MQ=255)
                                                                      tAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGt                                                                                >  1:4121928/1‑150 (MQ=255)
                                                                      tAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGt                                                                                >  1:4120433/1‑150 (MQ=255)
                                                                      tAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGt                                                                                >  2:2354889/1‑150 (MQ=255)
                                                                       aaTATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTg                                                                               >  2:748443/1‑150 (MQ=255)
                                                                           ttGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAAtt                                                                           >  2:1558439/1‑150 (MQ=255)
                                                                           ttGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAAtt                                                                           >  2:1558860/1‑150 (MQ=255)
                                                                           ttGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAAtt                                                                           >  1:1046511/1‑150 (MQ=255)
                                                                              ttAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCg                                                                        <  1:1347938/150‑1 (MQ=255)
                                                                                aataaAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGAt                                                                      <  2:2828068/150‑1 (MQ=255)
                                                                                  taaAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATAc                                                                    <  1:939546/150‑1 (MQ=255)
                                                                                    aaaaCTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATAccc                                                                  >  1:2348519/1‑150 (MQ=255)
                                                                                    aaaaCTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATAccc                                                                  >  1:2348517/1‑150 (MQ=255)
                                                                                     aaaCTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCa                                                                 >  2:3698694/1‑150 (MQ=255)
                                                                                     aaaCTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCa                                                                 >  2:3987682/1‑150 (MQ=255)
                                                                                      aaCTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCaa                                                                >  2:722332/1‑150 (MQ=255)
                                                                                      aaCTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCaa                                                                >  1:1678554/1‑150 (MQ=255)
                                                                                          ttATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAga                                                            >  1:130569/1‑150 (MQ=255)
                                                                                            aTTGATAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAgatg                                                          <  2:3253693/150‑1 (MQ=255)
                                                                                             ttGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAgatga                                                         <  2:1733838/150‑1 (MQ=255)
                                                                                              tGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAgatgat                                                        >  1:3487516/1‑150 (MQ=255)
                                                                                                agaATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCg                                                      >  1:909423/1‑150 (MQ=255)
                                                                                                 gaATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGa                                                     <  2:2724765/150‑1 (MQ=255)
                                                                                                   atatGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGAtt                                                   >  1:3352656/1‑150 (MQ=255)
                                                                                                   atatGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGAtt                                                   <  2:2329009/150‑1 (MQ=255)
                                                                                                   atatGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGAtt                                                   <  2:154777/150‑1 (MQ=255)
                                                                                                    tatGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGAttt                                                  <  2:2431025/150‑1 (MQ=255)
                                                                                                     atGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGAtttt                                                 >  2:1743051/1‑150 (MQ=255)
                                                                                                     atGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGAtttt                                                 <  1:1112503/150‑1 (MQ=255)
                                                                                                     atGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGAtttt                                                 >  1:4311448/1‑150 (MQ=255)
                                                                                                     atGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGAtttt                                                 >  1:2972362/1‑150 (MQ=255)
                                                                                                      tGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTtta                                                <  2:3592019/150‑1 (MQ=255)
                                                                                                      tGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTtta                                                >  1:2594243/1‑150 (MQ=255)
                                                                                                       gaagaaAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTttat                                               >  2:2258321/1‑150 (MQ=255)
                                                                                                        aagaaAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTttatt                                              >  1:3427659/1‑150 (MQ=255)
                                                                                                          gaaAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTaa                                            <  2:264145/150‑1 (MQ=255)
                                                                                                          gaaAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTaa                                            <  1:2205984/150‑1 (MQ=255)
                                                                                                            aaaTATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACa                                          <  2:2972362/150‑1 (MQ=255)
                                                                                                            aaaTATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACa                                          <  2:1348424/150‑1 (MQ=255)
                                                                                                             aaTATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAg                                         <  1:2694672/150‑1 (MQ=255)
                                                                                                             aaTATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAg                                         >  2:4135240/1‑150 (MQ=255)
                                                                                                                atTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGAtt                                      <  2:367412/150‑1 (MQ=255)
                                                                                                                 tttAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGAttt                                     >  2:897361/1‑150 (MQ=255)
                                                                                                                    aGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAAt                                  >  1:72371/1‑150 (MQ=255)
                                                                                                                       cATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACg                               <  2:1718947/150‑1 (MQ=255)
                                                                                                                          tGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAAt                            <  1:2401620/150‑1 (MQ=255)
                                                                                                                          tGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAAt                            >  2:3046215/1‑150 (MQ=255)
                                                                                                                          tGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAAt                            >  1:2661140/1‑150 (MQ=255)
                                                                                                                           gTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATa                           >  2:648285/1‑150 (MQ=255)
                                                                                                                           gTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATa                           >  2:3940387/1‑150 (MQ=255)
                                                                                                                             ccTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATaaa                         >  2:2282821/1‑150 (MQ=255)
                                                                                                                                tatataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATgg                      <  1:2188531/150‑1 (MQ=255)
                                                                                                                                 atataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGc                     >  2:2090070/1‑150 (MQ=255)
                                                                                                                                 atataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGc                     >  1:3154927/1‑150 (MQ=255)
                                                                                                                                  tataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATTGCt                    >  1:3775160/1‑150 (MQ=255)
                                                                                                                                   ataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTa                   >  1:2119723/1‑150 (MQ=255)
                                                                                                                                     aaaaGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAAt                 >  2:3275482/1‑150 (MQ=255)
                                                                                                                                       aaGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTg               >  2:39172/1‑150 (MQ=255)
                                                                                                                                        aGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGa              <  1:3736273/150‑1 (MQ=255)
                                                                                                                                        aGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGa              >  2:1384895/1‑150 (MQ=255)
                                                                                                                                         gATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGAt             <  2:3555774/150‑1 (MQ=255)
                                                                                                                                          aTCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGGGAATTTCGATACCCAACAGATGATCGATTTTATGAACAGATTTAATACGAATAAATGGCTCATTGATa            >  2:3223010/1‑150 (MQ=255)
                                                                                                                                            cccATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATaaa          <  2:4183914/150‑1 (MQ=255)
                                                                                                                                             ccATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATaaaa         >  1:311477/1‑150 (MQ=255)
                                                                                                                                                 tataCGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATaa     <  1:2997164/150‑1 (MQ=255)
                                                                                                                                                 tataCGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATaa     <  1:2997087/150‑1 (MQ=255)
                                                                                                                                                 tataCGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATaa     <  2:197289/150‑1 (MQ=255)
                                                                                                                                                  ataCGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATAAc    >  2:4002309/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
CATTGCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATAACAA  >  CP009273/4241484‑4241781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A