Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F159 I0 R1 879 305.9 9588012 96.6% 9262019 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 4,241,633 C→T 31.9% pseudogene (745/1323 nt) yjbI → pseudogene, SopA‑related, pentapeptide repeats‑containing

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092734,241,6330CT31.9% 173.9 / 111.8 119pseudogene (745/1323 nt)yjbIpseudogene, SopA‑related, pentapeptide repeats‑containing
Reads supporting (aligned to +/- strand):  ref base C (44/37);  new base T (23/15);  total (67/52)
Fisher's exact test for biased strand distribution p-value = 5.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.30e-01

Only 100 of 120 total aligned reads displayed.

CCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATAACAAT  >  CP009273/4241489‑4241782
                                                                                                                                                |                                                                                                                                                     
ccAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGt                                                                                                                                                  >  2:4084838/1‑150 (MQ=255)
  aGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCACTTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTta                                                                                                                                                >  1:3883860/1‑150 (MQ=255)
   gATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCACATTATACGCAGTtat                                                                                                                                               >  1:2843866/1‑150 (MQ=255)
    aTAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTtata                                                                                                                                              >  1:2820297/1‑150 (MQ=255)
    aTAATGCAATGATATTGAAATCAGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTtata                                                                                                                                              <  1:4055062/150‑1 (MQ=255)
      aaTGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATc                                                                                                                                            >  2:304660/1‑150 (MQ=255)
      aaTGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATc                                                                                                                                            <  2:2489804/150‑1 (MQ=255)
      aaTGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATCGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATc                                                                                                                                            <  2:340556/150‑1 (MQ=255)
       aTGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATcc                                                                                                                                           >  2:831993/1‑150 (MQ=255)
       aTGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATcc                                                                                                                                           >  2:831815/1‑150 (MQ=255)
               atatTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCtgat                                                                                                                                   <  2:1245970/150‑1 (MQ=255)
                 atTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCtgatga                                                                                                                                 >  2:3808972/1‑150 (MQ=255)
                     aaaTCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGAt                                                                                                                             >  1:2685304/1‑150 (MQ=255)
                     aaaTCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGAt                                                                                                                             >  1:2685081/1‑150 (MQ=255)
                        tCCGTTCTGGCCTTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGTTCCCATTATACGCAGTTATATCCATTCTGATGAAGATAAc                                                                                                                          <  1:3797098/150‑1 (MQ=255)
                        tCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAAc                                                                                                                          >  2:1035243/1‑150 (MQ=255)
                             tCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGtt                                                                                                                     <  1:4581987/150‑1 (MQ=255)
                              cTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTc                                                                                                                    >  2:4068306/1‑150 (MQ=255)
                                 gCCGTAAAACTGGTGATTCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCgat                                                                                                                 <  2:485838/150‑1 (MQ=255)
                                       aaaCTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGAtttt                                                                                                           >  1:1651954/1‑150 (MQ=255)
                                       aaaCTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGAtttt                                                                                                           >  1:1651977/1‑150 (MQ=255)
                                        aaCTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTa                                                                                                          <  2:1874370/150‑1 (MQ=255)
                                                 tGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAAc                                                                                                 <  2:2893109/150‑1 (MQ=255)
                                                 tGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAAc                                                                                                 >  2:4471710/1‑150 (MQ=255)
                                                 tGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAAc                                                                                                 >  1:265380/1‑150 (MQ=255)
                                                    aaTTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATc                                                                                              >  2:149699/1‑150 (MQ=255)
                                                     aTTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCg                                                                                             >  2:2975809/1‑150 (MQ=255)
                                                       tAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGAt                                                                                           >  2:3413293/1‑150 (MQ=255)
                                                        aaaaaTACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGAtt                                                                                          >  1:198067/1‑150 (MQ=255)
                                                        aaaaaTACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGAGTCAACAGCGAtt                                                                                          >  1:2591380/1‑150 (MQ=255)
                                                          aaaTACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCa                                                                                        <  1:2837202/150‑1 (MQ=255)
                                                          aaaTACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCa                                                                                        <  1:2835479/150‑1 (MQ=255)
                                                           aaTACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAg                                                                                       >  1:2054925/1‑150 (MQ=255)
                                                           aaTACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAg                                                                                       >  1:2478727/1‑150 (MQ=255)
                                                             tACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATGTCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTg                                                                                     >  2:3116469/1‑150 (MQ=255)
                                                              aCTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGa                                                                                    >  1:952601/1‑150 (MQ=255)
                                                                ttAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAgg                                                                                  >  2:3520349/1‑150 (MQ=255)
                                                                ttAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAgg                                                                                  >  2:3520530/1‑150 (MQ=255)
                                                                ttAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAgg                                                                                  >  2:3520533/1‑150 (MQ=255)
                                                                ttAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAgg                                                                                  >  2:3520566/1‑150 (MQ=255)
                                                                  aaTATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTg                                                                                >  1:2499256/1‑150 (MQ=255)
                                                                      ttGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAAtt                                                                            >  1:1528503/1‑150 (MQ=255)
                                                                      ttGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAAtt                                                                            >  1:3201554/1‑150 (MQ=255)
                                                                      ttGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAAtt                                                                            >  1:3201545/1‑150 (MQ=255)
                                                                       tGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAAttt                                                                           >  2:2089111/1‑150 (MQ=255)
                                                                         ttAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCg                                                                         <  2:1261543/150‑1 (MQ=255)
                                                                           aataaAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGAt                                                                       <  2:3702644/150‑1 (MQ=255)
                                                                           aataaAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGAt                                                                       <  2:1939901/150‑1 (MQ=255)
                                                                                  aCTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAAc                                                                >  1:2886709/1‑150 (MQ=255)
                                                                                  aCTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAAc                                                                >  1:1119894/1‑150 (MQ=255)
                                                                                      tATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAgat                                                            >  1:1122047/1‑150 (MQ=255)
                                                                                      tATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAgat                                                            >  2:1406742/1‑150 (MQ=255)
                                                                                        ttGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAgatga                                                          >  1:385342/1‑150 (MQ=255)
                                                                                         tGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAgatgat                                                         >  2:3149695/1‑150 (MQ=255)
                                                                                          gagaATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATc                                                        <  1:347563/150‑1 (MQ=255)
                                                                                          gagaATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATc                                                        <  2:1856224/150‑1 (MQ=255)
                                                                                          gagaATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATc                                                        <  1:3490610/150‑1 (MQ=255)
                                                                                          gagaATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATc                                                        <  2:744803/150‑1 (MQ=255)
                                                                                                  gaagaaAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTttat                                                <  1:1696845/150‑1 (MQ=255)
                                                                                                  gaagaaAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTttat                                                <  1:1696988/150‑1 (MQ=255)
                                                                                                      aaaaTATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAAc                                            >  1:880050/1‑150 (MQ=255)
                                                                                                      aaaaTATTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAAc                                            >  1:879807/1‑150 (MQ=255)
                                                                                                       aaaTATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACa                                           <  1:831815/150‑1 (MQ=255)
                                                                                                         atatTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGa                                         <  2:2415330/150‑1 (MQ=255)
                                                                                                          tatTTAGCCATTGTCCTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGAt                                        >  2:774489/1‑150 (MQ=255)
                                                                                                          tatTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGAt                                        >  2:2295882/1‑150 (MQ=255)
                                                                                                           atTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGAtt                                       <  2:3415397/150‑1 (MQ=255)
                                                                                                            tttAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGAttt                                      >  2:2769290/1‑150 (MQ=255)
                                                                                                               aGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAAt                                   >  1:964551/1‑150 (MQ=255)
                                                                                                                gCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATa                                  >  1:4693079/1‑150 (MQ=255)
                                                                                                                 ccATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATAc                                 <  2:3116/150‑1 (MQ=255)
                                                                                                                  cATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACg                                >  1:4381242/1‑150 (MQ=255)
                                                                                                                      gTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATa                            <  1:3360794/150‑1 (MQ=255)
                                                                                                                        ccTTATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATaaa                          >  2:4418980/1‑150 (MQ=255)
                                                                                                                        ccTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACATATTTAATAAGAATaaa                          >  2:2861586/1‑150 (MQ=255)
                                                                                                                        ccTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACACAACAGATGATCGATTTTATTAACAGATTTAATACGAATaaa                          >  2:469559/1‑150 (MQ=255)
                                                                                                                          ttATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATg                        <  1:1416664/150‑1 (MQ=255)
                                                                                                                          ttATATAAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATg                        <  1:1416901/150‑1 (MQ=255)
                                                                                                                           tatataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATgg                       <  2:2843866/150‑1 (MQ=255)
                                                                                                                            atataAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGc                      <  1:4723949/150‑1 (MQ=255)
                                                                                                                             tataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATAc                                 <  2:318182/138‑1 (MQ=255)
                                                                                                                             tataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATAc                                 >  1:318182/1‑138 (MQ=255)
                                                                                                                             tataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCt                     >  2:3692953/1‑150 (MQ=255)
                                                                                                                             tataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCt                     >  1:1975969/1‑150 (MQ=255)
                                                                                                                              ataAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTa                    >  2:2999976/1‑150 (MQ=255)
                                                                                                                               taAAAGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTaa                   >  1:3084477/1‑150 (MQ=255)
                                                                                                                               taAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTaa                   <  1:3808972/150‑1 (MQ=255)
                                                                                                                                 aaaGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAAtt                 <  1:4492495/150‑1 (MQ=255)
                                                                                                                                  aaGATCCCATTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTg                <  2:3528334/150‑1 (MQ=255)
                                                                                                                                  aaGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTg                <  2:513666/150‑1 (MQ=255)
                                                                                                                                   aGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGa               >  1:4331323/1‑150 (MQ=255)
                                                                                                                                    gATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGAt              <  2:543630/150‑1 (MQ=255)
                                                                                                                                     aTCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATa             <  1:270945/150‑1 (MQ=255)
                                                                                                                                      tCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATaa            <  2:2386103/150‑1 (MQ=255)
                                                                                                                                        ccATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATaaaa          <  1:1216631/150‑1 (MQ=255)
                                                                                                                                          aTTATATGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAAt        >  1:3739366/1‑150 (MQ=255)
                                                                                                                                            tataTGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATaa      <  2:2499777/150‑1 (MQ=255)
                                                                                                                                            tataTGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGAGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATaa      <  2:2500374/150‑1 (MQ=255)
                                                                                                                                              taCGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATAACa    >  1:927233/1‑150 (MQ=255)
                                                                                                                                                cGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATAACAAt  <  2:2725227/150‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                     
CCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATTTAATACGAATAAATGGCTAATTGATAAAAATAACAAT  >  CP009273/4241489‑4241782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A