Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F247 I0 R1
|
1496 |
299.8 |
9582018 |
97.8% |
9371213 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
1,235,606 |
G→T |
6.2% |
intergenic (+201/+185) |
dadX → / ← cvrA |
alanine racemase, catabolic, PLP‑binding/putative cation/proton antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 1,235,606 | 0 | G | T | 6.2%
| 1108.9
/ 29.6
| 290 | intergenic (+201/+185) | dadX/cvrA | alanine racemase, catabolic, PLP‑binding/putative cation/proton antiporter |
| Reads supporting (aligned to +/- strand): ref base G (125/147); new base T (10/8); total (135/155) |
| Fisher's exact test for biased strand distribution p-value = 4.72e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 |
Only 100 of 306 total aligned reads displayed.
CATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGCAGGCTCAGGCTGCGTTC > CP009273/1235458‑1235751
|
gTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACtt > 1:4295373/1‑149 (MQ=255)
gTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACtt > 2:3454478/1‑149 (MQ=255)
cAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCa < 1:1585310/149‑1 (MQ=255)
aaCTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATa > 2:4477973/1‑149 (MQ=255)
cTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATaaa < 1:2094325/149‑1 (MQ=255)
gttgttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACg > 1:3251859/1‑149 (MQ=255)
tgttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATACAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCt > 2:4110539/1‑149 (MQ=255)
tgttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCt < 2:1920044/149‑1 (MQ=255)
gttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCtt < 1:1800902/149‑1 (MQ=255)
gttAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATGTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCtt < 1:4212183/149‑1 (MQ=255)
ttAATGTGACAGAGCCATTGCCCTTGATAGTGTCCATTAAAAGGATTGACACTATTTCCCATGAACCTGAACTCACCGCACAGGCGTTATACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCttt < 1:881170/149‑1 (MQ=255)
aaTGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTAc > 2:3499067/1‑149 (MQ=255)
aaTGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTAc < 1:4723816/149‑1 (MQ=255)
tgtgACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTAccc < 1:2038637/149‑1 (MQ=255)
gACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTg > 2:2823748/1‑149 (MQ=255)
aCAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGa < 1:3656611/149‑1 (MQ=255)
agagCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATg < 1:1076729/149‑1 (MQ=255)
gCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAg > 1:2452284/1‑149 (MQ=255)
ttGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTg < 1:75017/149‑1 (MQ=255)
ttGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTg > 1:3634324/1‑149 (MQ=255)
tGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGt > 1:1953086/1‑149 (MQ=255)
gCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTa > 2:1347811/1‑149 (MQ=255)
gCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTa < 1:649794/149‑1 (MQ=255)
cccATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTAc > 1:3618843/1‑149 (MQ=255)
cATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCTAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACAt < 2:1981047/149‑1 (MQ=255)
cATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACAt < 1:1950570/149‑1 (MQ=255)
gATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGa > 1:2725150/1‑149 (MQ=255)
tAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGTCTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGAtt < 1:3208116/149‑1 (MQ=255)
gtgtCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTtg < 2:2781386/149‑1 (MQ=255)
tgtCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTtgt > 2:1110731/1‑149 (MQ=255)
gtCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTtgtg < 2:372408/149‑1 (MQ=255)
ttAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAAtt < 1:260588/149‑1 (MQ=255)
ttAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAAtt > 1:221812/1‑149 (MQ=255)
aGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTg > 1:2929292/1‑149 (MQ=255)
ggATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGa < 1:628538/149‑1 (MQ=255)
aTGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGAtt < 1:3913300/149‑1 (MQ=255)
tGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCTAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGAttt > 2:1289654/1‑149 (MQ=255)
tGGACACTATTTCCCCGGAACCTGAACTCACCACACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGAttt < 2:4591082/149‑1 (MQ=255)
ggACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGAtttt < 2:896889/149‑1 (MQ=255)
gACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTg < 2:3427863/149‑1 (MQ=255)
acacTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGa < 2:4192921/149‑1 (MQ=255)
cacTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGat > 2:1264725/1‑149 (MQ=255)
acTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGata > 2:2627523/1‑149 (MQ=255)
acTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGata > 2:85804/1‑149 (MQ=255)
acTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGata > 2:2600729/1‑149 (MQ=255)
acTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGata < 1:3077064/149‑1 (MQ=255)
acTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGata < 1:1728246/149‑1 (MQ=255)
acTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGata < 1:3598306/149‑1 (MQ=255)
cTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGatat > 2:551409/1‑149 (MQ=255)
aTTTCCCCGGAACCTGAACTCACTGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGt > 2:2562432/1‑149 (MQ=255)
tttCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGtt < 1:4134415/149‑1 (MQ=255)
tttCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGtt > 2:3131145/1‑149 (MQ=255)
tttCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGtt > 1:341402/1‑149 (MQ=255)
cccGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGttcaat < 2:3800652/149‑1 (MQ=255)
ccGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGttcaatt > 1:2544174/1‑149 (MQ=255)
ccGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGttcaatt < 1:2224767/149‑1 (MQ=255)
cGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCTAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGttcaattc > 1:3418786/1‑149 (MQ=255)
gAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGttcaattcaa < 2:1171217/149‑1 (MQ=255)
aCCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACa < 2:3647264/149‑1 (MQ=255)
ccTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACAt < 1:304985/149‑1 (MQ=255)
ccTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACAt < 2:3272898/149‑1 (MQ=255)
ccTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACAt < 1:95450/149‑1 (MQ=255)
ccTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACAt < 2:2976916/149‑1 (MQ=255)
aaCTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCaaa < 1:1320386/149‑1 (MQ=255)
tCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGa < 2:3751929/149‑1 (MQ=255)
tCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGa > 2:2221797/1‑149 (MQ=255)
ccGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAgg > 2:4375020/1‑149 (MQ=255)
gCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGtt < 1:2361900/149‑1 (MQ=255)
acaGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTaa < 1:1375990/149‑1 (MQ=255)
acaGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTaa < 2:756297/149‑1 (MQ=255)
caGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTaaa < 1:854557/149‑1 (MQ=255)
caGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTaaa > 2:1694805/1‑149 (MQ=255)
aGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAAt < 1:4438853/149‑1 (MQ=255)
gTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATg < 1:1120720/149‑1 (MQ=255)
gTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATg > 2:3868170/1‑149 (MQ=255)
ttCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATgg < 2:2915551/149‑1 (MQ=255)
aTAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGaca > 2:3945361/1‑149 (MQ=255)
aacacgcttacgcttCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGacaaa < 1:4565478/146‑1 (MQ=255)
aaaaCGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGacaaa > 2:2069724/1‑149 (MQ=255)
aaaCGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGacaaac < 1:496707/149‑1 (MQ=255)
aaaCGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGacaaac < 1:403554/149‑1 (MQ=255)
aaCGCTTACGCTTCATTGTTGACTCTAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGacaaaca < 1:783014/149‑1 (MQ=255)
acgcttacgcttCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGacaaacaa < 2:3099314/149‑1 (MQ=255)
tacgcttCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGca > 2:2306659/1‑149 (MQ=255)
tacgcttCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGca > 2:4704742/1‑149 (MQ=255)
tacgcttCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGca < 2:1513039/149‑1 (MQ=255)
acgcttCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGcag < 1:3451355/149‑1 (MQ=255)
acgcttCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGcag < 2:1452021/149‑1 (MQ=255)
cgcttCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGcagg > 1:2162173/1‑149 (MQ=255)
gcttCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGcaggc > 2:1002220/1‑149 (MQ=255)
cttCATTGTTGACTCTAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGcaggct > 1:733319/1‑149 (MQ=255)
ttCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGcaggctc > 1:4365350/1‑149 (MQ=255)
tCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGcaggctca > 1:2350108/1‑149 (MQ=255)
tCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGcaggctca < 1:100077/149‑1 (MQ=255)
aTTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGcaggctcagg < 2:472175/149‑1 (MQ=255)
ttgttgACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGcaggctcaggc < 1:2882743/149‑1 (MQ=255)
actcgaactcgaCTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGCAGTCTCAGGCTGCGtt > 2:1054005/1‑149 (MQ=255)
actcgaactcgaCTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGCAGGCTCAGGCTGCGtt > 2:1054054/1‑149 (MQ=255)
actcgaactcgaCTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGCAGGCTCAGGCTGCGtt > 2:2070395/1‑149 (MQ=255)
actcgaactcgaCTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGCAGGCTCAGGCTGCGtt < 2:2467254/149‑1 (MQ=255)
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CATCCGGCTGGTCAGCAACTGTAGTTGTTAATGTGACAGAGCCATTGCCCATGATAGTGTCCATTAAAAGGATGGACACTATTTCCCCGGAACCTGAACTCACCGCACAGGCGTTCTACATAAAACGCTTACGCTTCATTGTTGACTCGAACTCGACTTCAGATAAATCACGCTTTACCCTTGATGGAGCCTGTACATAGATTTGTGTAATTGCCTGATTTTGATATGTTCAATTCAACATCAAATGAAGGTTAAATTATGGACGACAAACAATTGCAGGCTCAGGCTGCGTTC > CP009273/1235458‑1235751
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
