Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F218 I0 R1 1506 278.7 9275112 94.5% 8764980 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 3,777,924 C→A 18.5% intergenic (‑122/+20) grxC ← / ← yibN glutaredoxin 3/putative rhodanese‑related sulfurtransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,777,9240CA18.5% 768.2 / 108.7 256intergenic (‑122/+20)grxC/yibNglutaredoxin 3/putative rhodanese‑related sulfurtransferase
Reads supporting (aligned to +/- strand):  ref base C (100/108);  new base A (22/25);  total (122/134)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 264 total aligned reads displayed.

CTTTGGTATAGATTTCAACATTGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACTGCATGCCAGAACCG  >  CP009273/3777775‑3778073
                                                                                                                                                     |                                                                                                                                                     
cTTTGGTATAGATTTCAACATTGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGcatc                                                                                                                                                       <  2:2612360/150‑1 (MQ=255)
   tGGTATAGATTTCAACATGGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATg                                                                                                                                                    <  2:2500692/150‑1 (MQ=255)
     gTATAGATTTCAACATTGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGaa                                                                                                                                                  >  2:1130078/1‑150 (MQ=255)
      tataGATTTCAACATTGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGaaa                                                                                                                                                 <  1:1669194/150‑1 (MQ=255)
         aGATTTCAACATTGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAgac                                                                                                                                              >  2:4312940/1‑150 (MQ=255)
           aTTTCAACATTGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAgacga                                                                                                                                            >  2:1292506/1‑150 (MQ=255)
             ttCAACATTGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACa                                                                                                                                          >  1:3258046/1‑150 (MQ=255)
                  cATTGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTaa                                                                                                                                     <  1:694531/150‑1 (MQ=255)
                    ttGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAat                                                                                                                                   >  2:3672239/1‑150 (MQ=255)
                    ttGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAat                                                                                                                                   <  2:2787667/150‑1 (MQ=255)
                     tGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAatt                                                                                                                                  <  2:1058094/150‑1 (MQ=255)
                      ggCCATAAATTAGCTCCTTTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAatta                                                                                                                                 <  1:104218/150‑1 (MQ=255)
                        ccATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCATAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAattatt                                                                                                                               >  2:4415941/1‑150 (MQ=255)
                         cATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTAttt                                                                                                                              <  1:1476826/150‑1 (MQ=255)
                          aTAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTg                                                                                                                             >  2:2276418/1‑150 (MQ=255)
                           tAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGc                                                                                                                            <  1:3667422/150‑1 (MQ=255)
                           tAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGc                                                                                                                            >  1:1324499/1‑150 (MQ=255)
                           tAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGc                                                                                                                            >  1:494195/1‑150 (MQ=255)
                               tttgCTCCTTTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCTAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTTACGGCCTGCATCATGATAGACGACAGGTAAATTATTTGCcgcg                                                                                                                        <  2:1870999/147‑1 (MQ=255)
                               ttAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCcgcg                                                                                                                        <  1:1259690/150‑1 (MQ=255)
                                 aGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCa                                                                                                                      >  1:1005005/1‑150 (MQ=255)
                                 aGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCa                                                                                                                      <  2:3821219/150‑1 (MQ=255)
                                   cTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCAcc                                                                                                                    >  2:1393003/1‑150 (MQ=255)
                                    tCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCa                                                                                                                   <  1:1876506/150‑1 (MQ=255)
                                     ccTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCaa                                                                                                                  >  2:2951585/1‑150 (MQ=255)
                                       tGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAg                                                                                                                <  2:3185988/150‑1 (MQ=255)
                                           tttttACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCaa                                                                                                            >  2:2064739/1‑150 (MQ=255)
                                               tACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGttt                                                                                                        <  1:4272736/150‑1 (MQ=255)
                                               tACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGttt                                                                                                        <  1:768594/150‑1 (MQ=255)
                                                aCCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGtttt                                                                                                       <  2:2865430/150‑1 (MQ=255)
                                                  ccTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCg                                                                                                     >  2:1772581/1‑150 (MQ=255)
                                                  ccTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCg                                                                                                     >  2:293853/1‑150 (MQ=255)
                                                  ccTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCg                                                                                                     >  1:1696732/1‑150 (MQ=255)
                                                   cTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGc                                                                                                    >  1:2093343/1‑150 (MQ=255)
                                                     gAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGcca                                                                                                  <  2:3578173/150‑1 (MQ=255)
                                                      aaaTTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGccag                                                                                                 >  2:697126/1‑150 (MQ=255)
                                                      aaaTTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGccag                                                                                                 >  1:2527650/1‑150 (MQ=255)
                                                         tttCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGccagccc                                                                                              >  1:2186443/1‑150 (MQ=255)
                                                            cATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGccagcccagc                                                                                           >  1:2996572/1‑150 (MQ=255)
                                                              tggtGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCccagcca                                                                                         <  1:4382603/147‑1 (MQ=255)
                                                              tGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCccagcca                                                                                         <  1:386647/150‑1 (MQ=255)
                                                                 tGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCg                                                                                      >  1:2366361/1‑150 (MQ=255)
                                                                   cAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGAc                                                                                    >  1:3376980/1‑150 (MQ=255)
                                                                    aGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACg                                                                                   >  1:812181/1‑150 (MQ=255)
                                                                       gcggcAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCct                                                                                <  1:491769/150‑1 (MQ=255)
                                                                       gcggcAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCct                                                                                <  1:3950238/150‑1 (MQ=255)
                                                                        cggcAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCctt                                                                               >  2:1869454/1‑150 (MQ=255)
                                                                         ggcAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCcttc                                                                              >  2:2516191/1‑150 (MQ=255)
                                                                         ggcAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCcttc                                                                              >  1:1154558/1‑150 (MQ=255)
                                                                         ggcAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCcttc                                                                              >  1:2506242/1‑150 (MQ=255)
                                                                         ggcAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCcttc                                                                              >  1:267759/1‑150 (MQ=255)
                                                                         ggcAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCcttc                                                                              >  2:633742/1‑150 (MQ=255)
                                                                               aaaaTGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAg                                                                        >  2:4232698/1‑150 (MQ=255)
                                                                                aaaTGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGc                                                                       >  2:4633868/1‑150 (MQ=255)
                                                                                 aaTGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCa                                                                      <  1:2186586/150‑1 (MQ=255)
                                                                                  aTGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCAc                                                                     <  2:3390832/150‑1 (MQ=255)
                                                                                    ggAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGGAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGa                                                                   >  2:1902364/1‑150 (MQ=255)
                                                                                       gtgtCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATa                                                                <  1:3501527/150‑1 (MQ=255)
                                                                                          tCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACtt                                                             <  1:4523074/150‑1 (MQ=255)
                                                                                             ccAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTgcg                                                          <  2:3513286/150‑1 (MQ=255)
                                                                                             ccAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTgcg                                                          <  1:110436/150‑1 (MQ=255)
                                                                                                gAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCaa                                                       >  1:1606201/1‑150 (MQ=255)
                                                                                                      tataACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAg                                                 >  1:2607903/1‑150 (MQ=255)
                                                                                                       ataACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGc                                                <  1:4017295/150‑1 (MQ=255)
                                                                                                        taACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCt                                               <  1:1868769/150‑1 (MQ=255)
                                                                                                         aaCAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCtt                                              <  1:371775/150‑1 (MQ=255)
                                                                                                           cAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTc                                            <  1:2010340/150‑1 (MQ=255)
                                                                                                                 gTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGt                                      <  2:1562468/150‑1 (MQ=255)
                                                                                                                 gTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGt                                      <  1:189555/150‑1 (MQ=255)
                                                                                                                 gTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGt                                      <  1:2593221/150‑1 (MQ=255)
                                                                                                                  tCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTg                                     >  2:1599202/1‑150 (MQ=255)
                                                                                                                  tCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTg                                     <  1:2196106/150‑1 (MQ=255)
                                                                                                                  tCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTg                                     <  1:181738/150‑1 (MQ=255)
                                                                                                                  tCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTg                                     <  2:2042901/150‑1 (MQ=255)
                                                                                                                  tCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTg                                     >  1:4184370/1‑150 (MQ=255)
                                                                                                                     cTGGGGGCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGt                                  >  2:3339894/1‑150 (MQ=255)
                                                                                                                      tGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGtt                                 <  1:1823180/150‑1 (MQ=255)
                                                                                                                      tGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGtt                                 >  1:1227239/1‑150 (MQ=255)
                                                                                                                       gggggCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGttt                                <  2:4427539/150‑1 (MQ=255)
                                                                                                                       gggggCCTAATTGCAGCTAACGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGttt                                <  1:1312919/150‑1 (MQ=255)
                                                                                                                          ggCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCa                             <  1:751801/150‑1 (MQ=255)
                                                                                                                           gCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAg                            >  2:4361624/1‑150 (MQ=255)
                                                                                                                            ccTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAgg                           >  2:3454405/1‑150 (MQ=255)
                                                                                                                              tAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCt                         <  1:1559586/150‑1 (MQ=255)
                                                                                                                              tAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCt                         >  2:1215278/1‑150 (MQ=255)
                                                                                                                              tAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCt                         <  2:3952730/150‑1 (MQ=255)
                                                                                                                                   gCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTgg                    >  2:3467773/1‑150 (MQ=255)
                                                                                                                                    cAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGc                   >  1:2849796/1‑150 (MQ=255)
                                                                                                                                     aGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCa                  <  1:59278/150‑1 (MQ=255)
                                                                                                                                       cTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGTCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACt                >  2:4083258/1‑150 (MQ=255)
                                                                                                                                       cTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACt                >  1:3857921/1‑150 (MQ=255)
                                                                                                                                       cTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACt                <  2:2570083/150‑1 (MQ=255)
                                                                                                                                        tAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACTg               >  1:2312245/1‑150 (MQ=255)
                                                                                                                                         aaCGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACTGc              >  2:870570/1‑150 (MQ=255)
                                                                                                                                           cGGCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACTGCAt            >  1:952360/1‑150 (MQ=255)
                                                                                                                                             gCCTGCATAATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACTGCATGc          <  1:2923749/150‑1 (MQ=255)
                                                                                                                                               cTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACTGCATGCCa        >  2:1154563/1‑150 (MQ=255)
                                                                                                                                               cTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACTGCATGCCa        <  1:625958/150‑1 (MQ=255)
                                                                                                                                                  catcatGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACTGCATGCCAGaa     >  1:4038525/1‑150 (MQ=255)
                                                                                                                                                     catGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACTGCATGCCAGAACCg  >  2:1430628/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CTTTGGTATAGATTTCAACATTGGCCATAAATTAGCTCCTGTTTTTTTACCCTGAAATTTCATGTTGCAGGGCGGCAGCAAAATGGAGTGTCCCCAGAAGCTTATAACAATAAGTCGCTGGGGGCCTAATTGCAGCTAACGGCCTGCATCATGAAAGACGACAGGTAAATTATTTGCCGCGCACCAAAGGCAAGTTTTCGCCAGCCCAGCCAGCGACGCCTTCTTTCAGCACGAATACTTGCGCAAAACCAGCTTTCGTCAGTGCGTTTGCAGGCTCCTGGCACTGCATGCCAGAACCG  >  CP009273/3777775‑3778073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A