Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F159 I0 R1
|
879 |
305.9 |
9588012 |
96.6% |
9262019 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
4,242,509 |
C→T |
42.8% |
L26F (CTC→TTC) |
ubiC → |
chorismate‑‑pyruvate lyase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 4,242,509 | 0 | C | T | 42.8%
| 211.6
/ inf
| 327 | L26F (CTC→TTC) | ubiC | chorismate‑‑pyruvate lyase |
| Reads supporting (aligned to +/- strand): ref base C (97/90); new base T (73/67); total (170/157) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 |
Only 100 of 328 total aligned reads displayed.
AATTTGCTTTACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCGTTACTGG > CP009273/4242361‑4242658
|
aaTTTGCTTTACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCt > 2:1579753/1‑150 (MQ=255)
aTTTGCTTTACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTc > 2:2666102/1‑150 (MQ=255)
aTTTGCTTTACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTc < 2:2857828/150‑1 (MQ=255)
tttGCTTTACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCg > 2:282211/1‑150 (MQ=255)
gCTTTACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACt < 1:3518373/150‑1 (MQ=255)
tttACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTgg < 1:828616/150‑1 (MQ=255)
ttACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGc > 1:1292435/1‑150 (MQ=255)
ttACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGc < 2:636792/150‑1 (MQ=255)
tACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCt > 1:2875417/1‑150 (MQ=255)
cATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGt < 2:3453591/150‑1 (MQ=255)
tctcCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTg < 1:2928884/150‑1 (MQ=255)
tctcCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTg > 2:2068970/1‑150 (MQ=255)
tcCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCt < 2:3957243/150‑1 (MQ=255)
gTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTggag < 1:4558782/150‑1 (MQ=255)
acacTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGAtt < 1:3194922/150‑1 (MQ=255)
cacTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTc < 1:3666932/150‑1 (MQ=255)
cTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCa < 1:3324566/150‑1 (MQ=255)
ttCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGa < 2:4280429/150‑1 (MQ=255)
tCTGCGATACATTGCCTTTACGTTATGTATCGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCATCTGTTCGACTGGCTGTTGCTGGAGGATTCCATGAc < 1:3798689/150‑1 (MQ=255)
tACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGt > 2:3534324/1‑150 (MQ=255)
tACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGt > 2:2502800/1‑150 (MQ=255)
aCAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGtt < 2:425458/150‑1 (MQ=255)
cAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGttt > 1:4591625/1‑150 (MQ=255)
aaTGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGtttt > 2:3673904/1‑150 (MQ=255)
tGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGa > 2:236757/1‑150 (MQ=255)
ccTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAAc > 1:2136401/1‑150 (MQ=255)
cTTTACGTTATGTANCGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGNGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAAca < 1:1718223/150‑1 (MQ=255)
cTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAAca > 1:2192774/1‑150 (MQ=255)
ttACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAAcagc > 2:4261787/1‑150 (MQ=255)
tACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAAcagca > 1:549114/1‑150 (MQ=255)
tACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAAcagca > 2:4110413/1‑150 (MQ=255)
ttATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGa < 2:2428886/150‑1 (MQ=255)
tATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGaa < 1:3084255/150‑1 (MQ=255)
aaCGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACg < 2:4771172/150‑1 (MQ=255)
aaCGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACg > 2:3209036/1‑150 (MQ=255)
cGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGt > 1:4113753/1‑150 (MQ=255)
ggAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTa > 1:4673050/1‑150 (MQ=255)
gagaGTTCGGCTTGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTaa < 1:2725784/150‑1 (MQ=255)
gTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGt < 2:3066545/150‑1 (MQ=255)
gTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGt > 2:4514666/1‑150 (MQ=255)
tCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGa > 1:4116070/1‑150 (MQ=255)
cGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGAc < 1:3421288/150‑1 (MQ=255)
cGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCGATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGAc < 2:1490112/150‑1 (MQ=255)
cATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgat > 1:976245/1‑150 (MQ=255)
aTGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgatg > 2:2608907/1‑150 (MQ=255)
tGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgatga < 1:2589709/150‑1 (MQ=255)
tGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgatga < 2:107048/150‑1 (MQ=255)
gTCACACCCCGCGTTATCGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgatgat < 1:1553502/150‑1 (MQ=255)
gTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACgatgat < 2:1883616/150‑1 (MQ=255)
cacaCCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATcc < 2:1390081/150‑1 (MQ=255)
cacaCCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATcc > 2:4021123/1‑150 (MQ=255)
cacCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCcgc < 1:2770186/150‑1 (MQ=255)
ccccGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGa > 1:1745087/1‑150 (MQ=255)
gcgTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAggg < 2:852932/150‑1 (MQ=255)
cgTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGt > 1:1117601/1‑150 (MQ=255)
gTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGtt > 1:3732646/1‑150 (MQ=255)
gTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGtt < 1:4783964/150‑1 (MQ=255)
ttAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGttt > 2:4471978/1‑150 (MQ=255)
tAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTg < 2:1746293/150‑1 (MQ=255)
tAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTg < 2:2103789/150‑1 (MQ=255)
aaCGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGt < 1:191509/150‑1 (MQ=255)
aaCGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGt < 2:38799/150‑1 (MQ=255)
aCGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTc < 2:2549350/150‑1 (MQ=255)
aCGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTc < 1:4393879/150‑1 (MQ=255)
gCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGa > 2:1679781/1‑150 (MQ=255)
gCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGa > 1:1834024/1‑150 (MQ=255)
cAACTGCGTGCGCTGCGCTATTGTTAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCTGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAg < 1:3588869/150‑1 (MQ=255)
tgcgtgcgCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGa > 1:2058709/1‑150 (MQ=255)
cgtgcgCTGCGCTAGTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAAt < 2:2268110/150‑1 (MQ=255)
cgtgcgCTGCGCTAGTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAAt < 2:3809234/150‑1 (MQ=255)
gtgcgCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATg < 1:385585/150‑1 (MQ=255)
gtgcgCTGCGCTAGTGTAAAGAGATCCCGGCCCTGGATCCGCAACTGTTCGACTGGCTGGTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATg < 1:3722800/150‑1 (MQ=255)
ctATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCga > 1:2292181/1‑150 (MQ=255)
tATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCgaa > 1:1187216/1‑150 (MQ=255)
tATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCACCgac > 2:4578373/1‑149 (MQ=255)
aTTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCgaag < 1:700950/150‑1 (MQ=255)
tAAAGAGATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACt > 1:41362/1‑150 (MQ=255)
aaaGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTg > 2:3603211/1‑150 (MQ=255)
aaaGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTg > 2:1809116/1‑150 (MQ=255)
aaGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGc > 2:4603797/1‑150 (MQ=255)
agagATCCCTGCCCTGGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGcc < 1:935821/150‑1 (MQ=255)
aTCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCgctg < 2:2168293/150‑1 (MQ=255)
ccctgccctgGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCgctgct < 2:906040/150‑1 (MQ=255)
ccctgccctgGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCgctgct < 2:3787698/150‑1 (MQ=255)
cctgccctgGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGctgctg > 2:4640920/1‑150 (MQ=255)
ctgccctgGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCtgctgc < 2:701354/150‑1 (MQ=255)
ctgccctgGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCtgctgc > 1:863300/1‑150 (MQ=255)
tgccctgGATCCGCAACTGCTCGACTGGCTGGTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGcc < 2:3336430/150‑1 (MQ=255)
gccctgGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCg < 1:2416429/150‑1 (MQ=255)
ccctgGATCCGCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGa > 2:4387347/1‑150 (MQ=255)
ccctgGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGa > 2:3831936/1‑150 (MQ=255)
ccctgGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGa > 1:2898607/1‑150 (MQ=255)
cctgGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAATAACTGCCGCTGCTGCCGaa > 1:115331/1‑150 (MQ=255)
tgGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAag > 2:2883993/1‑150 (MQ=255)
ggATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAaga < 1:4487587/150‑1 (MQ=255)
cGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGtctc < 1:4242654/150‑1 (MQ=255)
gCAACTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCg < 2:2033555/150‑1 (MQ=255)
aaCTGTTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCGtt > 2:2908156/1‑150 (MQ=255)
aaCTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCGtt > 2:230504/1‑150 (MQ=255)
tGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCGTTACt > 2:1035219/1‑150 (MQ=255)
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AATTTGCTTTACATCTCCCGTAAACACTTTTCTGCGATACAATGCCTTTACGTTATGTAACGGAGAGTTCGGCATGTCACACCCCGCGTTAACGCAACTGCGTGCGCTGCGCTATTGTAAAGAGATCCCTGCCCTGGATCCGCAACTGCTCGACTGGCTGTTGCTGGAGGATTCCATGACAAAACGTTTTGAACAGCAGGGAAAAACGGTAAGCGTGACGATGATCCGCGAAGGGTTTGTCGAGCAGAATGAAATCCCCGAAGAACTGCCGCTGCTGCCGAAAGAGTCTCGTTACTGG > CP009273/4242361‑4242658
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
