Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F527 I0 R1
|
1651 |
322.4 |
10661268 |
95.2% |
10149527 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
4,185,155 |
G→T |
25.5% |
I291I (ATC→ATA) |
thiC ← |
phosphomethylpyrimidine synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 4,185,155 | 0 | G | T | 25.5%
| 561.4
/ 152.5
| 270 | I291I (ATC→ATA) | thiC | phosphomethylpyrimidine synthase |
| Reads supporting (aligned to +/- strand): ref base G (120/80); new base T (35/34); total (155/115) |
| Fisher's exact test for biased strand distribution p-value = 2.04e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 |
Only 100 of 271 total aligned reads displayed.
ACATAGCGCAGCAGTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGAAGAGGTGACCGCCGA > CP009273/4185006‑4185301
|
aGCGCAGCAGTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCg < 1:1253284/150‑1 (MQ=255)
aGCGCAGCAGTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCg < 1:4510623/150‑1 (MQ=255)
gcgcAGCAGTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCgg > 1:3093967/1‑150 (MQ=255)
cgcAGCAGTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGc < 2:5110068/150‑1 (MQ=255)
cgcAGCAGTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGc > 2:3710783/1‑150 (MQ=255)
cgcAGCAGTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGAGCGGCACTGTACCGATCGGc > 2:3992639/1‑150 (MQ=255)
gcagcaGTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCa < 2:5311706/150‑1 (MQ=255)
gcagcaGTACGCCCGCATGGAAAGAGAAGTAATCCACACCTTGCACGGCCTGTTCCAGCTGAGTGTCGCGGAACGCTTCCAAGGTAAGATCTTCGGCGAACCCGTTAACCATATCCAGCGCCAGGTAGATCGGCACTGAACCTATCGGCa > 2:2631364/1‑150 (MQ=255)
agcagTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCAcc > 1:4759540/1‑150 (MQ=255)
cagTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCgg > 2:1226776/1‑150 (MQ=255)
agTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCggg > 2:586940/1‑150 (MQ=255)
tACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCt < 1:2702419/150‑1 (MQ=255)
gCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGtt < 2:1220736/150‑1 (MQ=255)
cccGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTa < 1:3599007/150‑1 (MQ=255)
ccGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTAc > 2:4185795/1‑150 (MQ=255)
cGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACg > 1:3258330/1‑150 (MQ=255)
tGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCaaa < 1:1673656/150‑1 (MQ=255)
gATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAAt > 2:69247/1‑150 (MQ=255)
aTAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATc > 2:1719205/1‑150 (MQ=255)
tAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATcc > 1:2749390/1‑150 (MQ=255)
tAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATcc < 2:3522201/150‑1 (MQ=255)
aGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCa < 2:2169130/150‑1 (MQ=255)
gTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATATTCGGAGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCAc > 2:1665977/1‑150 (MQ=255)
tGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACt < 2:1865653/150‑1 (MQ=255)
aaGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTcg > 2:488546/1‑150 (MQ=255)
aaGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTcg > 2:2835195/1‑150 (MQ=255)
gTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTcgcg > 2:7695/1‑150 (MQ=255)
aaTCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCggg < 1:4235110/150‑1 (MQ=255)
aaTCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCggg > 2:4836685/1‑150 (MQ=255)
ccACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGttt < 1:2153595/150‑1 (MQ=255)
ccACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGttt > 2:2246647/1‑150 (MQ=255)
cacaCCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTc > 1:229376/1‑150 (MQ=255)
cacaCCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTc < 1:397579/150‑1 (MQ=255)
cacaCCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTc > 1:2933383/1‑150 (MQ=255)
cacaCCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTc > 1:4959019/1‑150 (MQ=255)
ccTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGa < 1:2106017/150‑1 (MQ=255)
tGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAata > 2:2036419/1‑150 (MQ=255)
gCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAatat < 2:2603460/150‑1 (MQ=255)
cTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAAtata < 1:5328689/150‑1 (MQ=255)
tCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAg < 2:1495440/150‑1 (MQ=255)
cGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCNAAATCCACTCGCGGGTTTCGTGAATATAGc > 2:2523802/1‑150 (MQ=255)
cGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGc < 1:3675786/150‑1 (MQ=255)
gCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGa > 1:1886637/1‑150 (MQ=255)
ccTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGAc < 1:3386378/150‑1 (MQ=255)
cTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGAcc < 1:3535768/150‑1 (MQ=255)
cTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCCCTCGCGGGTTTCGTGAATATAGCGAcc < 1:909134/150‑1 (MQ=255)
cTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGAcc > 2:879443/1‑150 (MQ=255)
cTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGAcc < 1:1407941/150‑1 (MQ=255)
tGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCg > 2:3941823/1‑150 (MQ=255)
cagcGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGgagag > 2:64665/1‑150 (MQ=255)
agcGTGGCGCGGAACGCTTCCCAGGTAAGTTCTTCGGCGATCCCGTTACCCTTCTCCAGCGCCGGGTAGATCGGCACTGTACCGTTCGGCACCGGGCTGTTACGCAAAATCCACTCGGGGGTTTCGTGAATATAGCGACCGGTGgagagt < 2:2823164/150‑2 (MQ=255)
gtgtCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATcc < 2:4373127/150‑1 (MQ=255)
tgtCGCGGAACGCTTCCCCGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCa < 2:3365655/150‑1 (MQ=255)
gcgGAACGCTTCCCTGTTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTATATCGGCACTGTACCGATCGGCACCGGGCTGTTACGAAAAATCCACTCGCGGGTTTCGTGAATATCGCGACCGGTGGAGAGATCCATCAc < 2:1100494/150‑1 (MQ=255)
ggAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCg > 1:4321131/1‑150 (MQ=255)
ggAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCg > 2:3247626/1‑150 (MQ=255)
cGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATc > 1:818278/1‑150 (MQ=255)
gCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATcc > 1:75457/1‑150 (MQ=255)
gCTTCCCAGGTAAGATCGTCGGCGATCCCGTTCCCCTTCTCCAGGGCCGGGTAGATCGGCACTGTACCTAGGGGCACGGGGCTGTTAGGCAATCTCCACTCGGGGGTTTCGTGATTTTAGCGACCGGTGGAGAGATCCATCACCGTATcc < 2:2952100/150‑1 (MQ=255)
ccAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTcc > 2:4969741/1‑150 (MQ=255)
aGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTcccc < 2:5158844/150‑1 (MQ=255)
ggTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCa > 2:299520/1‑150 (MQ=255)
aaGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAgcg > 1:5222203/1‑150 (MQ=255)
aGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAgcgc > 2:3623325/1‑150 (MQ=255)
ttCGGCGATCCCGTTAACCTACCCCCGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGa < 2:4980873/150‑1 (MQ=255)
cGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGAcc > 2:347793/1‑150 (MQ=255)
gCGATCCCGTTACCCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCAt < 1:204287/150‑1 (MQ=255)
gATCCCTTTAACCTTCTCCAGCGCCTGGTCGATCGGCACTGTCCCGATCGGCACGGGGCTGTTACGCAAAAGCCACTCGCGGGTTTCGTGAATATCGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATAc < 1:1987608/150‑1 (MQ=255)
gATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATAc > 1:2416361/1‑150 (MQ=255)
gATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATAc > 1:5125963/1‑150 (MQ=255)
gATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATAc > 1:158950/1‑150 (MQ=255)
cccGTTAACCTTCTCCCGCGCCTGGTAGATCGGCACTGTACCGATCGGCACAGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGAGAATATCGCGACCGGTGGAGAGATCCATCACCGAATCCGCTCCCCAGCGCGTGGACCATACCAg > 2:2344537/1‑150 (MQ=255)
cccGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAg < 2:4737139/150‑1 (MQ=255)
gTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCtt > 2:317477/1‑150 (MQ=255)
ttAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCttt > 1:1716016/1‑150 (MQ=255)
aaCCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTc > 1:2810354/1‑150 (MQ=255)
aaCCTTCCCCAGCGCCTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTCCGAAAAATCCCCTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTc < 1:3765252/150‑1 (MQ=255)
aCCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTcc > 1:2896717/1‑150 (MQ=255)
tctcCCGCGCCTGGTTGATCGGCAGTGTACCGATCGGCACGGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCActt < 1:1076046/150‑1 (MQ=255)
tctcCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCActt > 2:3920426/1‑150 (MQ=255)
ctcCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCGGCTTTTCCActtc > 1:5115555/1‑150 (MQ=255)
ccAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCActtctt > 2:2082402/1‑150 (MQ=255)
aGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGTGCGTGGACCATACCAGCTTTTCCActtcttct > 1:2216861/1‑150 (MQ=255)
aGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCActtcttct > 2:5329831/1‑150 (MQ=255)
gcgcCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTACGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCActtcttctt < 2:3631659/150‑1 (MQ=255)
ccTGGTAGATCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGa > 2:2739542/1‑150 (MQ=255)
tggaataTCGGAACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGCGTTTAGTGAATATAGCGACCGGTGGAGAGATCAAACACCGTATCCGCTCCACAGCGCGTGGACCAAACAAGCTTATCAACTTCTTCTTCGAtc > 2:5032413/7‑149 (MQ=255)
tGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATg > 2:4041601/1‑150 (MQ=255)
tGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATg > 1:411249/1‑150 (MQ=255)
ggTTGATCGGCAGTTTACCGTTCGGCACGGGGTTTTTACGCAAAATCCACTGGGGGGTTTGGTTAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATgg < 1:2832123/150‑1 (MQ=255)
ggTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATgg > 1:1172646/1‑150 (MQ=255)
gTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGa > 2:205840/1‑150 (MQ=255)
tAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGaa > 1:97782/1‑150 (MQ=255)
tAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGaa > 2:2205446/1‑150 (MQ=255)
aGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGAag < 2:3084851/150‑1 (MQ=255)
aTCGGCACTGTACCTATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGAagag < 1:4876397/150‑1 (MQ=255)
aTCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGAagag > 1:800291/1‑150 (MQ=255)
gCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGAAGAGGTGa < 2:4544529/150‑1 (MQ=255)
tACCGATCGGCACGGGGCTGTTACGCAAAATCCCCTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGAAGAGGTGAccgccg < 1:954902/150‑1 (MQ=255)
aCCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGAAGAGGTGACCGCCGa < 1:3838949/150‑1 (MQ=255)
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ACATAGCGCAGCAGTACGCCCGCATGGATAGTGAAGTAATCCACACCTTGCTCGGCCTGTTCCAGCAGCGTGTCGCGGAACGCTTCCCAGGTAAGATCTTCGGCGATCCCGTTAACCTTCTCCAGCGCCTGGTAGATCGGCACTGTACCGATCGGCACCGGGCTGTTACGCAAAATCCACTCGCGGGTTTCGTGAATATAGCGACCGGTGGAGAGATCCATCACCGTATCCGCTCCCCAGCGCGTGGACCATACCAGCTTTTCCACTTCTTCTTCGATGGAAGAGGTGACCGCCGA > CP009273/4185006‑4185301
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
