Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
26 |
102.0 |
3326124 |
78.0% |
2594376 |
98.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP002094 |
305,914 |
C→T |
K226K (AAG→AAA) |
LLNZ_01670 ← |
Nisin biosynthesis two‑component system, sensor histidine kinase NisK |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP002094 | 305,914 | 0 | C | T | 100.0%
| 418.4
/ NA
| 103 | K226K (AAG→AAA) | LLNZ_01670 | Nisin biosynthesis two‑component system, sensor histidine kinase NisK |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (52/51); total (52/51) |
Only 100 of 103 total aligned reads displayed.
GTCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGCTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGATT > CP002094/305822‑306008
|
gTCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCa < 2:822619/99‑1 (MQ=255)
gTCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCa > 1:1532207/1‑99 (MQ=255)
tCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCAt < 2:111622/99‑1 (MQ=255)
tCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCAt < 1:1182486/99‑1 (MQ=255)
tCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCAt > 2:629867/1‑99 (MQ=255)
tCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCAt > 2:24541/1‑99 (MQ=255)
tCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCAt > 1:1563184/1‑99 (MQ=255)
cATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATg > 2:378263/1‑99 (MQ=255)
aTCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGa < 1:1625361/99‑1 (MQ=255)
aTCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGa < 1:575055/99‑1 (MQ=255)
tctcTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGAc > 2:335363/1‑99 (MQ=255)
tAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTc < 2:1274204/99‑1 (MQ=255)
tAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTc < 1:898181/99‑1 (MQ=255)
gCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCg > 2:465763/1‑99 (MQ=255)
cAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGc < 2:1541092/99‑1 (MQ=255)
aGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCt > 1:1471149/1‑99 (MQ=255)
gTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCtt > 1:629142/1‑99 (MQ=255)
ttCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTc > 2:1576839/1‑99 (MQ=255)
aaTATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAAt < 1:34193/99‑1 (MQ=255)
aaTATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAAt < 2:1525809/99‑1 (MQ=255)
atatTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATa > 1:1642192/1‑99 (MQ=255)
atatTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATa < 2:24105/99‑1 (MQ=255)
atatTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATa > 2:69746/1‑99 (MQ=255)
tatTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATaa > 1:665591/1‑99 (MQ=255)
tatTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATaa > 1:580055/1‑99 (MQ=255)
tttCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAgg > 1:1359808/1‑99 (MQ=255)
tttCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAgg > 2:1351064/1‑99 (MQ=255)
ttCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGa < 1:1315970/99‑1 (MQ=255)
tCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGaa > 2:703018/1‑99 (MQ=255)
tCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGaa > 2:905925/1‑99 (MQ=255)
cTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAg > 1:120959/1‑99 (MQ=255)
cTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAg < 2:1631888/99‑1 (MQ=255)
ttttAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGc < 1:695170/99‑1 (MQ=255)
ttttAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGc < 2:451764/99‑1 (MQ=255)
ttttAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGc < 2:1110789/99‑1 (MQ=255)
ttAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAGTCATGTTTTTCATGACGCTCCGCTTCAATAAAGAAAGCTa > 1:1565514/1‑99 (MQ=255)
ttAATACTGTTAAAGGCGTCTTAACATCATGTGAAAGGGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTa > 2:813280/1‑99 (MQ=255)
taataaTGTAAAATGTTTATAAACAACAGGTGAAAGTGCAGCAACCGGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTaa < 1:1583847/99‑1 (MQ=255)
aTACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACt < 2:1545034/99‑1 (MQ=255)
aTACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACt < 1:24541/99‑1 (MQ=255)
aTACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACt > 1:439008/1‑99 (MQ=255)
aTACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACt > 1:1272175/1‑99 (MQ=255)
tACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTc > 2:339780/1‑99 (MQ=255)
tACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTc > 2:381095/1‑99 (MQ=255)
tACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTc > 2:636316/1‑99 (MQ=255)
tACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTc > 2:936051/1‑99 (MQ=255)
tACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAAGCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTc < 1:1086696/99‑1 (MQ=255)
aCTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTcc > 1:720875/1‑99 (MQ=255)
cTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCt < 2:37790/99‑1 (MQ=255)
gTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTa > 2:1056963/1‑99 (MQ=255)
ttAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTAc < 1:775204/99‑1 (MQ=255)
aaGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACttt > 2:234915/1‑99 (MQ=255)
aGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACtttt < 1:1121242/99‑1 (MQ=255)
aGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACtttt < 2:82265/99‑1 (MQ=255)
ggTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTc < 2:597834/99‑1 (MQ=255)
tgtCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGa > 1:1470649/1‑99 (MQ=255)
gtCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGaa < 2:894122/99‑1 (MQ=255)
gtCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGaa < 2:1071570/99‑1 (MQ=255)
tCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAat > 2:48301/1‑99 (MQ=255)
cTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAata > 2:775717/1‑99 (MQ=255)
cTTAACATCATGCGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAata < 1:1255019/99‑1 (MQ=255)
ttAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAatat < 1:1488276/99‑1 (MQ=255)
aaCATCATGTGAAAGTGGAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATaa < 1:994104/99‑1 (MQ=255)
aaCATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATaa < 2:1382963/99‑1 (MQ=255)
aaCATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATaa > 1:558109/1‑99 (MQ=255)
aCATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAg > 2:1201524/1‑99 (MQ=255)
catcatGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGt > 2:1655638/1‑99 (MQ=255)
atcatGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGtt > 1:818588/1‑99 (MQ=255)
tcatGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTa > 2:817086/1‑99 (MQ=255)
tcatGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTa > 2:1065127/1‑99 (MQ=255)
catGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTAt < 1:987298/99‑1 (MQ=255)
gtgAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCa > 1:919021/1‑99 (MQ=255)
gtgAAAGTGCAGCAACCTGGAAGAATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCa < 2:62642/99‑1 (MQ=255)
tgAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAg < 1:1505725/99‑1 (MQ=255)
aaaGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGaa < 2:351608/99‑1 (MQ=255)
aaGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAAc < 1:844683/99‑1 (MQ=255)
aaGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAAc < 2:1631383/99‑1 (MQ=255)
aaGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAAc > 2:827742/1‑99 (MQ=255)
aGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAAcc < 1:23717/99‑1 (MQ=255)
gTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACTCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCt < 2:216831/99‑1 (MQ=255)
cagcaACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGAt < 1:165832/99‑1 (MQ=255)
gcaACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCa > 2:387723/1‑99 (MQ=255)
aaCCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCaaa < 1:1155830/99‑1 (MQ=255)
aaCCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCaaa > 2:1546751/1‑99 (MQ=255)
cTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTc < 1:1351064/99‑1 (MQ=255)
ggAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCaa < 1:1655638/99‑1 (MQ=255)
gAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCaat < 1:387723/99‑1 (MQ=255)
aGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCaataa > 1:52065/1‑99 (MQ=255)
aGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCaataa > 2:1235809/1‑99 (MQ=255)
ggATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCaataat > 1:157572/1‑99 (MQ=255)
aTAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAAttt > 1:325967/1‑99 (MQ=255)
aTAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAAttt < 1:191035/99‑1 (MQ=255)
tAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAAtttt < 2:646655/99‑1 (MQ=255)
tAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAAtttt < 2:450077/99‑1 (MQ=255)
aaTCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTg > 1:1539047/1‑99 (MQ=255)
aaTCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTg < 2:868080/99‑1 (MQ=255)
aTCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGa > 2:306233/1‑99 (MQ=255)
tCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGAt > 1:897248/1‑99 (MQ=255)
tCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGAt < 2:1305704/99‑1 (MQ=255)
cATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGAtt < 1:1237174/99‑1 (MQ=255)
|
GTCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGCTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGATT > CP002094/305822‑306008
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TACTTCAGTCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGCTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGATTCC > CP002094/305815‑306010
|
TACTTCAGTCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGT > SRR7892090.117958/1‑100 (MQ=60)
cgttacttatttatttttttaaatttttcttTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTT < SRR7892090.1611928/69‑1 (MQ=60)
AGTCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCA > SRR7892090.1541559/1‑100 (MQ=60)
GTCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCAT > SRR7892090.1572831/1‑100 (MQ=60)
TCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATG < SRR7892090.1190137/100‑1 (MQ=60)
ATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGAC < SRR7892090.1635647/100‑1 (MQ=60)
ATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGAC < SRR7892090.580225/100‑1 (MQ=60)
TAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCC < SRR7892090.904965/100‑1 (MQ=60)
CAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCT > SRR7892090.1479890/1‑100 (MQ=60)
AGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTT > SRR7892090.634534/1‑100 (MQ=60)
AATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATA < SRR7892090.34535/100‑1 (MQ=60)
AATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATA > SRR7892090.1652638/1‑100 (MQ=60)
ATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAA > SRR7892090.585257/1‑100 (MQ=60)
ATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAA > SRR7892090.671234/1‑100 (MQ=60)
ATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCtaacattgattgcaactggtgt > SRR7892090.297301/1‑78 (MQ=60)
ATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGG > SRR7892090.1367839/1‑100 (MQ=60)
TTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAA < SRR7892090.1323918/100‑1 (MQ=60)
CCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAG > SRR7892090.122061/1‑100 (MQ=60)
TTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCT < SRR7892090.700994/100‑1 (MQ=60)
TTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAGTCATGTTTTTCATGACGCTCCGCTTCAATAAAGAAAGCTA > SRR7892090.1575182/1‑100 (MQ=60)
taataatgtaaaatgtttataaacaacagGTGAAAGTGCAGCAACCGGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAAC < SRR7892090.1593698/71‑1 (MQ=60)
AATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACT > SRR7892090.1280027/1‑100 (MQ=60)
AATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACT > SRR7892090.443128/1‑100 (MQ=60)
ATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTC < SRR7892090.24798/100‑1 (MQ=60)
TACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCC > SRR7892090.726894/1‑100 (MQ=60)
TACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAAGCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCC < SRR7892090.1094102/100‑1 (MQ=60)
GTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTAC < SRR7892090.572391/100‑1 (MQ=60)
TTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACT < SRR7892090.781375/100‑1 (MQ=60)
AGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTC < SRR7892090.1128737/100‑1 (MQ=60)
GTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAaataaaaaccctactttttt > SRR7892090.927623/1‑80 (MQ=60)
GTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGA > SRR7892090.1479388/1‑100 (MQ=60)
CTTAACATCATGCGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATAT < SRR7892090.1262847/100‑1 (MQ=60)
TTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATA < SRR7892090.1497198/100‑1 (MQ=60)
TAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAA > SRR7892090.563151/1‑100 (MQ=60)
AACATCATGTGAAAGTGGAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAG < SRR7892090.1001213/100‑1 (MQ=60)
CATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTT > SRR7892090.825046/1‑100 (MQ=60)
CATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATT < SRR7892090.994381/100‑1 (MQ=60)
TGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCA > SRR7892090.925840/1‑100 (MQ=60)
TGAAAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGA < SRR7892090.1514816/100‑1 (MQ=60)
AAGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACC < SRR7892090.851285/100‑1 (MQ=60)
AGTGCAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCT < SRR7892090.23961/100‑1 (MQ=60)
CAGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATC < SRR7892090.167299/100‑1 (MQ=60)
AGCAACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAttcttgtgcctcattaagtt > SRR7892090.724801/1‑80 (MQ=60)
AACCTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAAT < SRR7892090.1163405/100‑1 (MQ=60)
CTGGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCA < SRR7892090.1359086/100‑1 (MQ=60)
GGAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAAT < SRR7892090.1666211/100‑1 (MQ=60)
GAAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATA < SRR7892090.391533/100‑1 (MQ=60)
AAGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAA > SRR7892090.52542/1‑100 (MQ=60)
AGGATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAAT > SRR7892090.158935/1‑100 (MQ=60)
GATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTT > SRR7892090.329133/1‑100 (MQ=60)
ATAAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTT < SRR7892090.192785/100‑1 (MQ=60)
AAATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTG > SRR7892090.1548474/1‑100 (MQ=60)
ATCATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGAT > SRR7892090.904024/1‑100 (MQ=60)
CATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGATTC < SRR7892090.1244964/100‑1 (MQ=60)
ATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGATTCC > SRR7892090.1587224/1‑100 (MQ=60)
ATGTTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGATTCC > SRR7892090.880077/1‑100 (MQ=60)
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TACTTCAGTCATCTCTAGCAGTTCAATATTTCCTTTTAATACTGTTAAAGGTGTCTTAACATCATGTGAAAGTGCAGCAACCTGGAAGGATAAATCATGCTTTTCATGACGCTCCGCTTCAATAAGGAAAGCTAACTCCTTACTTTTCGAATATAAGTTATTCAGAACCTGATCAAATTCAATAATTTTTGATTCC > CP002094/305815‑306010
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
