Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
26 |
102.0 |
3326124 |
78.0% |
2594376 |
98.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP002094 |
306,674 |
C→T |
E199E (GAG→GAA) |
LLNZ_01675 ← |
Nisin biosynthesis two‑component system, response regulator NisR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP002094 | 306,674 | 0 | C | T | 100.0%
| 455.2
/ NA
| 111 | E199E (GAG→GAA) | LLNZ_01675 | Nisin biosynthesis two‑component system, response regulator NisR |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (55/56); total (55/56) |
Only 100 of 114 total aligned reads displayed.
TATTTTTTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATACTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGATAG > CP002094/306578‑306769
|
tatTTTTTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTc < 1:810252/99‑1 (MQ=255)
ttttttACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCg > 2:257241/1‑99 (MQ=255)
tttttACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCga > 2:86938/1‑99 (MQ=255)
ttACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGAt > 2:448992/1‑99 (MQ=255)
tACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGAtt > 1:1266987/1‑99 (MQ=255)
aCCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTg < 1:1149803/99‑1 (MQ=255)
tGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGa < 2:1135651/99‑1 (MQ=255)
tGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGa > 1:848122/1‑99 (MQ=255)
ccACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGaaa < 1:1374746/99‑1 (MQ=255)
ccACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGaaa > 1:739061/1‑99 (MQ=255)
cACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGaaaa > 1:967053/1‑99 (MQ=255)
cACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGaaaa > 2:606936/1‑99 (MQ=255)
cTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAg < 2:1187819/99‑1 (MQ=255)
cTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAg > 1:1484671/1‑99 (MQ=255)
tGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGt > 1:1202997/1‑99 (MQ=255)
aTACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGc > 2:1225304/1‑99 (MQ=255)
aTACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGc > 1:966885/1‑99 (MQ=255)
aTACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGc > 2:826318/1‑99 (MQ=255)
tACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCa > 2:1178461/1‑99 (MQ=255)
tACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCa > 1:741382/1‑99 (MQ=255)
tACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCa > 1:1548534/1‑99 (MQ=255)
aCCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCAt < 2:973000/99‑1 (MQ=255)
aCCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCAt < 1:289098/99‑1 (MQ=255)
cccAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCAtt < 2:1413188/99‑1 (MQ=255)
cccAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCAtt > 1:293920/1‑99 (MQ=255)
cAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAg > 1:984276/1‑99 (MQ=255)
aGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGaa < 1:1623256/99‑1 (MQ=255)
tCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAata < 2:562215/99‑1 (MQ=255)
aCCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATtcatca < 2:540671/99‑1 (MQ=255)
aCCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATtcatca > 1:567609/1‑99 (MQ=255)
ccGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTcatcat < 2:32082/99‑1 (MQ=255)
cGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCata < 1:1306558/99‑1 (MQ=255)
cGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCata < 2:881427/99‑1 (MQ=255)
cGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCata < 2:1617964/99‑1 (MQ=255)
gTTTGTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCatat < 1:1103510/99‑1 (MQ=255)
tttttATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCAtata > 2:180276/1‑99 (MQ=255)
tttttATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCAtata < 2:440814/99‑1 (MQ=255)
tttttATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCAtata < 2:553246/99‑1 (MQ=255)
tttttATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCAtata < 1:843587/99‑1 (MQ=255)
ttATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGt < 1:732378/99‑1 (MQ=255)
ttATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGt < 2:1315579/99‑1 (MQ=255)
tATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGtc > 2:85310/1‑99 (MQ=255)
tCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGtcat > 1:1247177/1‑99 (MQ=255)
ggATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGtcatca < 1:226501/99‑1 (MQ=255)
gATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTcatcat > 2:773876/1‑99 (MQ=255)
gATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTcatcat < 2:180106/99‑1 (MQ=255)
aTTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATa > 1:512869/1‑99 (MQ=255)
aTTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATa > 1:337414/1‑99 (MQ=255)
ttAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATaa > 1:1602629/1‑99 (MQ=255)
tAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATaaa < 1:1000637/99‑1 (MQ=255)
aaTATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAat > 1:1489846/1‑99 (MQ=255)
tatCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAatat < 2:676038/99‑1 (MQ=255)
tatCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAatat > 2:709506/1‑99 (MQ=255)
tatCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAatat > 2:758540/1‑99 (MQ=255)
tatCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAatat < 1:1653384/99‑1 (MQ=255)
tCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATTATAAATATct > 1:331025/1‑98 (MQ=255)
tCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATcc > 1:145395/1‑99 (MQ=255)
tCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATcc < 2:448149/99‑1 (MQ=255)
cGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCct > 2:1241439/1‑99 (MQ=255)
gTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCctc > 1:1368901/1‑99 (MQ=255)
tATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCctct > 1:871421/1‑99 (MQ=255)
aTGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCctctc < 2:1155669/99‑1 (MQ=255)
aTGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCctctc > 2:1194176/1‑99 (MQ=255)
tGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTAATCATATACGTCATCATAAATATCctctct > 1:1080081/1‑99 (MQ=255)
ggTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCtctctc > 2:850212/1‑99 (MQ=255)
tGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGt > 1:57916/1‑99 (MQ=255)
gCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGta < 1:1226984/99‑1 (MQ=255)
aaaCTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGtata < 2:296559/99‑1 (MQ=255)
aaCTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATaa > 2:1533360/1‑99 (MQ=255)
aCTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATaaa > 1:1204434/1‑99 (MQ=255)
aCTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGCGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATaaa < 1:1582671/99‑1 (MQ=255)
ttACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACt < 1:351890/99‑1 (MQ=255)
ttACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACt < 2:110171/99‑1 (MQ=255)
tACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACtt < 2:1602629/99‑1 (MQ=255)
tACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACtt < 2:182736/99‑1 (MQ=255)
aCTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACttt < 2:962053/99‑1 (MQ=255)
aCTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACttt > 2:439760/1‑99 (MQ=255)
cTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACttca > 1:1118468/1‑97 (MQ=255)
cTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTa > 1:1082008/1‑99 (MQ=255)
cTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTa > 1:255375/1‑99 (MQ=255)
cTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTa < 1:993805/99‑1 (MQ=255)
cTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTa > 1:1570120/1‑99 (MQ=255)
cTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGaa > 2:1070082/1‑99 (MQ=255)
aaTCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGt < 2:1062503/99‑1 (MQ=255)
aTCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGtt < 2:1193530/99‑1 (MQ=255)
aTCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGtt > 2:673776/1‑99 (MQ=255)
cTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCg < 2:1004639/99‑1 (MQ=255)
tGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGt < 1:317853/99‑1 (MQ=255)
agATAAATATATTCCGAGATTGACCGAAAAAATGCATAAGAATATTCATCATATACGTCTTCATAAATATCCCCTCTCCTATGAACTATAGATGTTCGt < 2:184885/98‑1 (MQ=255)
aTAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTtg < 1:114120/99‑1 (MQ=255)
aTAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTtg > 1:1444111/1‑99 (MQ=255)
tAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTtgt > 1:1122777/1‑99 (MQ=255)
aaTATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGa < 1:586270/99‑1 (MQ=255)
aaTATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGa > 1:1347729/1‑99 (MQ=255)
aaTATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGa > 2:670470/1‑99 (MQ=255)
aaTATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGa < 1:1298433/99‑1 (MQ=255)
atatatTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGAt > 1:522733/1‑99 (MQ=255)
atatatTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGAt > 1:919453/1‑99 (MQ=255)
tataTTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGATa < 2:1202997/99‑1 (MQ=255)
atatTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGATAg < 1:448992/99‑1 (MQ=255)
|
TATTTTTTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATACTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGATAG > CP002094/306578‑306769
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATATTTTTTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATACTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGATAGTAA > CP002094/306576‑306772
|
AATATTTTTTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATT < SRR7892090.272032/100‑1 (MQ=60)
ATATTTTTTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTC < SRR7892090.1001762/100‑1 (MQ=60)
ATATTTTTTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTC < SRR7892090.777133/100‑1 (MQ=60)
TATTTTTTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCC < SRR7892090.816681/100‑1 (MQ=60)
TATTTTTTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCC < SRR7892090.430744/100‑1 (MQ=60)
TTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATT > SRR7892090.1274835/1‑100 (MQ=60)
TTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATT < SRR7892090.944797/100‑1 (MQ=60)
ACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGA < SRR7892090.1157354/100‑1 (MQ=60)
ATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGA > SRR7892090.854745/1‑100 (MQ=60)
GCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAA > SRR7892090.745125/1‑100 (MQ=60)
CCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAA > SRR7892090.974096/1‑100 (MQ=60)
CCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAA < SRR7892090.1382803/100‑1 (MQ=60)
ACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAG > SRR7892090.1493555/1‑100 (MQ=60)
CTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGT > SRR7892090.1210713/1‑100 (MQ=60)
acccccctcccccccatttttttttttgagatTTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGC < SRR7892090.527228/68‑1 (MQ=60)
GATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGC > SRR7892090.973926/1‑100 (MQ=60)
ATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCA > SRR7892090.747462/1‑100 (MQ=60)
ATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCA > SRR7892090.1558044/1‑100 (MQ=60)
ACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATT > SRR7892090.296753/1‑100 (MQ=60)
ACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATT < SRR7892090.291859/100‑1 (MQ=60)
CCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAG > SRR7892090.991353/1‑100 (MQ=60)
AGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAAT < SRR7892090.1633522/100‑1 (MQ=60)
GAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATC < SRR7892090.1327694/100‑1 (MQ=60)
AACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCA > SRR7892090.572737/1‑100 (MQ=60)
CGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATAT < SRR7892090.1314481/100‑1 (MQ=60)
GTTTGTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATA < SRR7892090.1110960/100‑1 (MQ=60)
TTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATAC < SRR7892090.850179/100‑1 (MQ=60)
TTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTC < SRR7892090.738424/100‑1 (MQ=60)
ATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCAT > SRR7892090.1254994/1‑100 (MQ=60)
TCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATC < SRR7892090.1518424/100‑1 (MQ=60)
TCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATC < SRR7892090.24357/100‑1 (MQ=60)
GGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCAT < SRR7892090.228638/100‑1 (MQ=60)
GATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATA > SRR7892090.517520/1‑100 (MQ=60)
GATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATA > SRR7892090.340708/1‑100 (MQ=60)
ATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAA > SRR7892090.1612663/1‑100 (MQ=60)
TAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAAT > SRR7892090.1498783/1‑100 (MQ=60)
TAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAAT < SRR7892090.1007770/100‑1 (MQ=60)
ATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATAC < SRR7892090.794512/42‑1 (MQ=60)
TATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATC < SRR7892090.1663934/100‑1 (MQ=60)
ATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATTATAAATATCT > SRR7892090.334252/1‑100 (MQ=60)
ATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCC > SRR7892090.146664/1‑100 (MQ=60)
CGTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTC > SRR7892090.1376949/1‑100 (MQ=60)
GTATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCT > SRR7892090.878114/1‑100 (MQ=60)
ATGGTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTAATCATATACGTCATCATAAATATCCTCTCT > SRR7892090.1087467/1‑100 (MQ=60)
GTGCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGT > SRR7892090.58441/1‑100 (MQ=60)
GCAAACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTAT < SRR7892090.1234746/100‑1 (MQ=60)
AACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAA > SRR7892090.1212155/1‑100 (MQ=60)
ACTTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGCGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAAC < SRR7892090.1592507/100‑1 (MQ=60)
TTACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTT < SRR7892090.355339/100‑1 (MQ=60)
ACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTA > SRR7892090.257820/1‑100 (MQ=60)
ACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTA > SRR7892090.1579847/1‑100 (MQ=60)
ACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTA > SRR7892090.1089400/1‑100 (MQ=60)
ACTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTCA > SRR7892090.1125959/1‑100 (MQ=60)
CTCCTAATCTGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAG < SRR7892090.1000914/100‑1 (MQ=60)
TGATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTT < SRR7892090.320926/100‑1 (MQ=60)
GATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTG > SRR7892090.1452582/1‑100 (MQ=60)
ATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGT > SRR7892090.1130273/1‑100 (MQ=60)
ATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGT < SRR7892090.115156/100‑1 (MQ=60)
ATAAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGT > SRR7892090.1183039/1‑100 (MQ=60)
AAATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGA > SRR7892090.1355744/1‑100 (MQ=60)
AATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGAT < SRR7892090.741863/100‑1 (MQ=60)
AATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGAT < SRR7892090.591505/100‑1 (MQ=60)
AATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGAT > SRR7892090.926276/1‑100 (MQ=60)
AATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGAT > SRR7892090.527494/1‑100 (MQ=60)
AATATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGAT < SRR7892090.1306332/100‑1 (MQ=60)
ATATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGATAGT < SRR7892090.453155/100‑1 (MQ=60)
ATTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGATAGTAA > SRR7892090.571248/1‑100 (MQ=60)
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AATATTTTTTACCCATGCCACTGATACCCAAGTCCCCGAACCGTTTTTATCGGATTAATATCGTATGGTGCAAACTTACTCCTAATCTGATAAATATACTCCGAGATTGACCGAAAAAGTGCATTAGAATATTCATCATATACGTCATCATAAATATCCTCTCTCGTATAAACTTTAGAAGTTCGTTGTGATAGTAA > CP002094/306576‑306772
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
