Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
26 |
102.0 |
3326124 |
78.0% |
2594376 |
98.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP002094 |
308,336 |
C→G |
G142R (GGT→CGT) |
LLNZ_01685 ← |
multidrug‑efflux transporter protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP002094 | 308,336 | 0 | C | G | 100.0%
| 411.7
/ NA
| 103 | G142R (GGT→CGT) | LLNZ_01685 | multidrug‑efflux transporter protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (59/44); total (59/44) |
Only 100 of 106 total aligned reads displayed.
GCAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACCAACAGCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCG > CP002094/308242‑308430
|
gCAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGGCTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAca > 2:292733‑M2/1‑97 (MQ=255)
cAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcag < 1:550820‑M2/99‑4 (MQ=255)
gggAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcag < 2:750308‑M2/99‑7 (MQ=255)
ggAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagc > 1:939222‑M2/1‑92 (MQ=255)
ggAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagc < 1:1344501‑M2/99‑8 (MQ=255)
gagaTGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGGCAAGAAAATTTTTCccaacacaaacaaaa > 1:1565064/1‑96 (MQ=255)
gatgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CTAACACGAAcagcagctgt > 1:578121‑M2/1‑89 (MQ=255)
gatgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgt < 2:632302‑M2/99‑11 (MQ=255)
atgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtc > 1:387910‑M2/1‑88 (MQ=255)
tgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtcc < 2:817394‑M2/99‑13 (MQ=255)
tgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtcc < 1:903594‑M2/99‑13 (MQ=255)
tgatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtcc < 1:1155475‑M2/99‑13 (MQ=255)
gatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtcca > 1:1290573‑M2/1‑86 (MQ=255)
gatTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtcca > 1:908530‑M2/1‑86 (MQ=255)
atTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccat < 1:635289‑M2/99‑15 (MQ=255)
atTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccat > 1:899413‑M2/1‑85 (MQ=255)
ttGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatc > 2:1296835‑M2/1‑84 (MQ=255)
gCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccg > 2:1134684‑M2/1‑82 (MQ=255)
cTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccga > 2:272612‑M2/1‑81 (MQ=255)
agaaagagggggCCTAATTTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatact > 1:72995‑M2/5‑76 (MQ=255)
aaGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatact < 1:232448‑M2/99‑24 (MQ=255)
aaGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatact < 2:1149695‑M2/99‑24 (MQ=255)
aaGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatact > 1:792611‑M2/1‑76 (MQ=255)
gTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttt < 2:254317‑M2/99‑26 (MQ=255)
gTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttt < 2:1257329‑M2/99‑26 (MQ=255)
aGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttg > 2:1609747‑M2/1‑72 (MQ=255)
gAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgt < 2:1643313‑M2/99‑29 (MQ=255)
gAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgt < 1:860313‑M2/99‑29 (MQ=255)
aaGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgtt < 2:948955‑M2/99‑30 (MQ=255)
aaGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgtt > 1:1590723‑M2/1‑70 (MQ=255)
aGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttc < 1:638115‑M2/99‑31 (MQ=255)
aGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttc < 1:1528989‑M2/99‑31 (MQ=255)
aGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttc > 2:1164280‑M2/1‑69 (MQ=255)
ggggACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcg < 2:233363‑M2/99‑32 (MQ=255)
gACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgatt > 1:721769‑M2/1‑65 (MQ=255)
aCTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattt > 1:1300791‑M2/1‑64 (MQ=255)
aCTGAATTTCCAAAATGGGCTAGGAGGCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattt > 1:1077109‑M2/1‑64 (MQ=255)
gAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttct > 2:371928‑M2/1‑61 (MQ=255)
aaTTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAccgcagttgtccatccgaatacttttgttcgattttctt < 2:1221501‑M2/99‑40 (MQ=255)
aaTTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttctt < 2:163671‑M2/99‑40 (MQ=255)
aaTTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttctt > 2:678893‑M2/1‑60 (MQ=255)
aaTTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttctt < 1:1563224‑M2/99‑40 (MQ=255)
aaTTTCCAAAATGGGCTAGGAGTCCACCAACGGTG‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgagtacttttgttcgattttatt < 2:522960‑M2/99‑40 (MQ=255)
aTTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttc < 1:643716‑M2/99‑41 (MQ=255)
aTTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttc < 1:1413906‑M2/99‑41 (MQ=255)
aTTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttc > 2:1542907‑M2/1‑59 (MQ=255)
aTTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttc < 2:443137‑M2/99‑41 (MQ=255)
aTTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagatgtccatccgaatacttttgttcgattttcttc > 1:750308‑M2/1‑59 (MQ=255)
tttCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttca > 2:57073‑M2/1‑58 (MQ=255)
ttCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAGCACGAAcagcagctgtccatccgaatacttttgttcgattttcttcat > 1:634290‑M2/1‑57 (MQ=255)
ttCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcat > 1:242352‑M2/1‑57 (MQ=255)
ttCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcat > 1:1094819‑M2/1‑57 (MQ=255)
cAAAATGGGCTAGGAGTCCCCCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcag > 1:558992‑M2/1‑54 (MQ=255)
cAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtgcatccgaatacttttgttcgattttcttcatcag > 1:450931‑M2/1‑54 (MQ=255)
cAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcag > 1:1320857‑M2/1‑54 (MQ=255)
cAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcag > 2:56780‑M2/1‑54 (MQ=255)
aaaaatGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatccttttgttcgattttcttcatcag > 2:683802‑M2/2‑54 (MQ=255)
aaTGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaa > 2:1653741‑M2/1‑51 (MQ=255)
aTGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaat > 2:593299‑M2/1‑50 (MQ=255)
aTGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaat < 1:1183996‑M2/99‑50 (MQ=255)
aTGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaat < 2:661938‑M2/99‑50 (MQ=255)
gggCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatat > 1:1358015‑M2/1‑48 (MQ=255)
gggCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatat > 2:1576195‑M2/1‑48 (MQ=255)
ggCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatc < 2:1216436‑M2/99‑53 (MQ=255)
ggCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatc > 1:868682‑M2/1‑47 (MQ=255)
cTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcgg < 2:1187446‑M2/99‑55 (MQ=255)
cTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcgg > 2:364750‑M2/1‑45 (MQ=255)
tAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggc < 1:1010864‑M2/99‑56 (MQ=255)
tAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggc < 1:668769‑M2/99‑56 (MQ=255)
ggAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcga > 2:1590503‑M2/1‑42 (MQ=255)
aGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaa > 2:1018967‑M2/1‑40 (MQ=255)
gTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagccgctgtccatccgaatacttttgttcgattttcttcatcagtaatatctgtgaaat < 2:25825‑M2/99‑61 (MQ=255)
gTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaat < 2:1194617‑M2/99‑61 (MQ=255)
gTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaat > 2:1512510‑M2/1‑39 (MQ=255)
ccaccaACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataa > 2:731681‑M2/1‑37 (MQ=255)
ctccaccGGTT‑GGGCCAT‑AAATTCTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataag > 2:1069313‑M2/3‑36 (MQ=255)
caccaACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccacccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataag > 1:529655‑M2/1‑36 (MQ=255)
aCGGTT‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaa < 1:1255676‑M2/99‑69 (MQ=255)
tt‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtactatcggcgaaataagcgaaaagtg < 2:1019313‑M2/99‑73 (MQ=255)
t‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgt > 2:1458034‑M2/1‑26 (MQ=255)
t‑GGGCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgt > 2:397006‑M2/1‑26 (MQ=255)
gggCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtc > 2:1217109‑M2/1‑25 (MQ=255)
gggCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtc > 1:233363‑M2/1‑25 (MQ=255)
gggCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagagtc < 1:239075‑M2/99‑75 (MQ=255)
ggCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtgatatcggcgaaataagcgaaaagtgtca < 1:502796‑M2/99‑76 (MQ=255)
ggCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtca < 1:980374‑M2/99‑76 (MQ=255)
ggCCAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtca > 1:632302‑M2/1‑24 (MQ=255)
cAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcgg > 1:703013‑M2/1‑21 (MQ=255)
cAG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcgg < 2:703013‑M2/75‑55 (MQ=255)
aG‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgat < 2:757791‑M2/99‑80 (MQ=255)
g‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgata < 1:254216‑M2/99‑81 (MQ=255)
g‑AAATTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgata > 1:835347‑M2/1‑19 (MQ=255)
aaaTTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggtgaaataagcgaaaagtgtcacgatat > 1:717349‑M2/1‑18 (MQ=255)
aaaTTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatat > 2:1379975‑M2/1‑18 (MQ=255)
aTTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatgtcggcgaaataagcgaaaagtgtcacgatattt < 1:366470‑M2/99‑84 (MQ=255)
aTTGTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatattt > 1:642184‑M2/1‑16 (MQ=255)
gTT‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttcca > 2:1358253‑M2/1‑13 (MQ=255)
tt‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttccac > 1:1257329‑M2/1‑12 (MQ=255)
t‑CCAACACGAAcagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttccacc < 2:577561‑M2/99‑89 (MQ=255)
acacgaacagcagctgtccatccgaatacttttgttcgattttcttcatcagtaatatcggcgaaataagcgaaaagtgtcacgatatttccaccggtt < 1:603171‑M2/99‑93 (MQ=255)
|
GCAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTT‑GGGCCAG‑AAATTGTT‑CCAACACCAACAGCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCG > CP002094/308242‑308430
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATTTGCAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACCAACAGCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACC > CP002094/308237‑308429
|
GATTTGCAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAATCCACCAACGGTTGGGCCAGAAATTGTTCCAACACG < SRR7892090.172242/100‑1 (MQ=60)
GCAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAACAG > SRR7892090.555789/1‑100 (MQ=60)
aaaaattaatacaaaaaaaaaagggggggtgaaattttcaAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAACAGCAGC < SRR7892090.1512140/60‑1 (MQ=60)
GGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAACAGCAGC > SRR7892090.1352514/1‑100 (MQ=60)
GGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAACAGCAGCT < SRR7892090.946196/100‑1 (MQ=60)
GATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCTAACACGAACAGCAGCtgtc < SRR7892090.583314/100‑5 (MQ=60)
ATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCC < SRR7892090.391723/100‑1 (MQ=60)
ATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCC > SRR7892090.910381/1‑100 (MQ=60)
ATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCC > SRR7892090.1163050/1‑100 (MQ=60)
GATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCAT < SRR7892090.1298457/100‑1 (MQ=60)
GATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCAT < SRR7892090.915323/100‑1 (MQ=60)
GATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCAT > SRR7892090.640704/1‑100 (MQ=60)
ATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATC < SRR7892090.906198/100‑1 (MQ=60)
AAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACT > SRR7892090.234664/1‑100 (MQ=60)
agaaagagggggcctaatTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTT < SRR7892090.73627/82‑1 (MQ=60)
AAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTT < SRR7892090.798928/100‑1 (MQ=60)
AGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGT > SRR7892090.866989/1‑100 (MQ=60)
AAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTC > SRR7892090.1538309/1‑100 (MQ=60)
AAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTC < SRR7892090.1600648/100‑1 (MQ=60)
AAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTC > SRR7892090.643535/1‑100 (MQ=60)
GACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTT < SRR7892090.727789/100‑1 (MQ=60)
ACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTT < SRR7892090.1308699/100‑1 (MQ=60)
ACTGAATTTCCAAAATGGGCTAGGAGGCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTT < SRR7892090.1084483/100‑1 (MQ=60)
taaatcaaCAAAAGGGGCTAGGAGTCCACCAACGGTTGGGCCAGCAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCT < SRR7892090.364822/92‑1 (MQ=60)
acacaacgcgtgtggcgcggtcccccccccgtggtTTGGGCCATAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCT < SRR7892090.50520/65‑1 (MQ=60)
GAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTT > SRR7892090.1572872/1‑100 (MQ=60)
AATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTC > SRR7892090.1422031/1‑100 (MQ=60)
AATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTC > SRR7892090.649154/1‑100 (MQ=60)
ATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGATGTCCATCCGAATACTTTTGTTCGATTTTCTTCA < SRR7892090.756412/100‑1 (MQ=60)
TTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAGCACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATC < SRR7892090.639702/100‑1 (MQ=60)
TTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATC < SRR7892090.1102240/100‑1 (MQ=60)
TTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATC < SRR7892090.244670/100‑1 (MQ=60)
TTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATC < SRR7892090.214926/100‑1 (MQ=60)
CAAAATGGGCTAGGAGTCCCCCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGT < SRR7892090.564048/100‑1 (MQ=60)
CAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTGCATCCGAATACTTTTGTTCGATTTTCTTCATCAGT < SRR7892090.455100/100‑1 (MQ=60)
CAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGT < SRR7892090.1328815/100‑1 (MQ=60)
AATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAAT > SRR7892090.1191651/1‑100 (MQ=60)
GGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATC < SRR7892090.1366045/100‑1 (MQ=60)
GGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCG < SRR7892090.875374/100‑1 (MQ=60)
tcagacgtgtgctcttccgatctCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGC < SRR7892090.708918/77‑1 (MQ=60)
CTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGC > SRR7892090.674451/1‑100 (MQ=60)
CTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGC > SRR7892090.1018034/1‑100 (MQ=60)
CACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCACCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGC < SRR7892090.534462/100‑1 (MQ=60)
AACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAA > SRR7892090.1263505/1‑100 (MQ=60)
AACGGTTGGGCCAGAAATTGGTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAA < SRR7892090.642331/100‑1 (MQ=60)
TGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGAGTC > SRR7892090.241362/1‑100 (MQ=60)
GGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTGATATCGGCGAAATAAGCGAAAAGTGTCA > SRR7892090.507344/1‑100 (MQ=60)
GGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCA > SRR7892090.987446/1‑100 (MQ=60)
GGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCA < SRR7892090.235585/100‑1 (MQ=60)
GGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCAC < SRR7892090.637704/100‑1 (MQ=60)
AGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATA > SRR7892090.256650/1‑100 (MQ=60)
GAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATAT < SRR7892090.841894/100‑1 (MQ=60)
AAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGTGAAATAAGCGAAAAGTGTCACGATATT < SRR7892090.723365/100‑1 (MQ=60)
AATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATGTCGGCGAAATAAGCGAAAAGTGTCACGATATTT > SRR7892090.370059/1‑100 (MQ=60)
ATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTC < SRR7892090.647619/100‑1 (MQ=60)
TTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACC < SRR7892090.1265160/100‑1 (MQ=60)
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GATTTGCAAGGGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACCAACAGCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACC > CP002094/308237‑308429
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
