Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
26 |
102.0 |
3326124 |
78.0% |
2594376 |
98.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
CP002094 |
308,346 |
(AGC)3→2 |
coding (412‑414/1080 nt) |
LLNZ_01685 ← |
multidrug‑efflux transporter protein |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
CP002094 |
308339 |
308341 |
3 |
110 [1] |
[0] 113 |
LLNZ_01685 |
multidrug‑efflux transporter protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP002094 |
308342 = | 0 (0.000) | 104 (1.120) |
68/182 |
0.2 |
100% |
coding (418/1080 nt) |
LLNZ_01685 |
multidrug‑efflux transporter protein |
| ? | CP002094 |
= 308338 |
0 (0.000) | coding (422/1080 nt) |
LLNZ_01685 |
multidrug‑efflux transporter protein |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACCAACAGCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGCCATCGA > CP002094/308247‑308443
|
GGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAACAGCAGCT < SRR7892090.946196/100‑1 (MQ=60)
ATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCC > SRR7892090.910381/1‑100 (MQ=60)
ATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCC > SRR7892090.1163050/1‑100 (MQ=60)
ATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCC < SRR7892090.391723/100‑1 (MQ=60)
GATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCAT < SRR7892090.915323/100‑1 (MQ=60)
GATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCAT > SRR7892090.640704/1‑100 (MQ=60)
GATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCAT < SRR7892090.1298457/100‑1 (MQ=60)
ATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATC < SRR7892090.906198/100‑1 (MQ=60)
AAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACT > SRR7892090.234664/1‑100 (MQ=60)
agaaagagggggcctaatTTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTT < SRR7892090.73627/82‑1 (MQ=60)
AAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTT < SRR7892090.798928/100‑1 (MQ=60)
AGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGT > SRR7892090.866989/1‑100 (MQ=60)
AAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTC > SRR7892090.1538309/1‑100 (MQ=60)
AAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTC < SRR7892090.1600648/100‑1 (MQ=60)
AAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTC > SRR7892090.643535/1‑100 (MQ=60)
GACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTT < SRR7892090.727789/100‑1 (MQ=60)
ACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTT < SRR7892090.1308699/100‑1 (MQ=60)
ACTGAATTTCCAAAATGGGCTAGGAGGCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTT < SRR7892090.1084483/100‑1 (MQ=60)
taaatcaaCAAAAGGGGCTAGGAGTCCACCAACGGTTGGGCCAGCAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCT < SRR7892090.364822/92‑1 (MQ=60)
acacaacgcgtgtggcgcggtcccccccccgtggtTTGGGCCATAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCT < SRR7892090.50520/65‑1 (MQ=60)
GAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTT > SRR7892090.1572872/1‑100 (MQ=60)
AATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTC > SRR7892090.649154/1‑100 (MQ=60)
AATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTC > SRR7892090.1422031/1‑100 (MQ=60)
ATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGATGTCCATCCGAATACTTTTGTTCGATTTTCTTCA < SRR7892090.756412/100‑1 (MQ=60)
TTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAGCACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATC < SRR7892090.639702/100‑1 (MQ=60)
TTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATC < SRR7892090.244670/100‑1 (MQ=60)
TTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATC < SRR7892090.1102240/100‑1 (MQ=60)
TTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATC < SRR7892090.214926/100‑1 (MQ=60)
CAAAATGGGCTAGGAGTCCCCCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGT < SRR7892090.564048/100‑1 (MQ=60)
CAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTGCATCCGAATACTTTTGTTCGATTTTCTTCATCAGT < SRR7892090.455100/100‑1 (MQ=60)
CAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGT < SRR7892090.1328815/100‑1 (MQ=60)
AATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAAT > SRR7892090.1191651/1‑100 (MQ=60)
GGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATC < SRR7892090.1366045/100‑1 (MQ=60)
GGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCG < SRR7892090.875374/100‑1 (MQ=60)
tcagacgtgtgctcttccgatctCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGC < SRR7892090.708918/77‑1 (MQ=60)
CTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGC > SRR7892090.674451/1‑100 (MQ=60)
CTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGC > SRR7892090.1018034/1‑100 (MQ=60)
CACCAACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCACCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGC < SRR7892090.534462/100‑1 (MQ=60)
AACGGTTGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAA > SRR7892090.1263505/1‑100 (MQ=60)
AACGGTTGGGCCAGAAATTGGTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAA < SRR7892090.642331/100‑1 (MQ=60)
TGGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGAGTC > SRR7892090.241362/1‑100 (MQ=60)
GGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTGATATCGGCGAAATAAGCGAAAAGTGTCA > SRR7892090.507344/1‑100 (MQ=60)
GGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCA > SRR7892090.987446/1‑100 (MQ=60)
GGGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCA < SRR7892090.235585/100‑1 (MQ=60)
GGCCAGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCAC < SRR7892090.637704/100‑1 (MQ=60)
AGAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATA > SRR7892090.256650/1‑100 (MQ=60)
GAAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATAT < SRR7892090.841894/100‑1 (MQ=60)
AAATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGTGAAATAAGCGAAAAGTGTCACGATATT < SRR7892090.723365/100‑1 (MQ=60)
AATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATGTCGGCGAAATAAGCGAAAAGTGTCACGATATTT > SRR7892090.370059/1‑100 (MQ=60)
ATTGTTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTC < SRR7892090.647619/100‑1 (MQ=60)
TTCCAACACGAA‑‑‑CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACC < SRR7892090.1265160/100‑1 (MQ=60)
aacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTT > SRR7892090.608464/9‑100 (MQ=60)
aacacgaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGAGTCCCGATATTTCCACCGGTT > SRR7892090.923393/9‑100 (MQ=60)
gaaCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGCC > SRR7892090.1034792/4‑100 (MQ=60)
AACAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGCCA < SRR7892090.455465/100‑1 (MQ=60)
CAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGCCATC < SRR7892090.409204/100‑1 (MQ=60)
GCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTAACGATATTTCCACCGGTTAAGCCActga > SRR7892090.464788/1‑96 (MQ=60)
|
GGAGATGATTGCTCCAAAGTAGAAGGGGACTGAATTTCCAAAATGGGCTAGGAGTCCACCAACGGTTGGGCCAGAAATTGTTCCAACACCAACAGCAGCAGCTGTCCATCCGAATACTTTTGTTCGATTTTCTTCATCAGTAATATCGGCGAAATAAGCGAAAAGTGTCACGATATTTCCACCGGTTAAGCCATCGA > CP002094/308247‑308443
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
