Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
152 |
24.9 |
2083062 |
91.6% |
1908084 |
109.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
2,843,580 |
+G |
intergenic (‑1/+68) |
pip ← / ← h16_B2516 |
prolyl aminopeptidase/transcriptional regulator, LysR‑family |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 2,843,579 | 1 | . | G | 100.0%
| 123.0
/ NA
| 32 | M1M (ATG→CTG) † | pip | prolyl aminopeptidase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (18/14); total (18/14) |
GCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCG > AM260480/2843461‑2843706
|
gccgGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg < 1:730987/134‑1 (MQ=255)
cgGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGga < 2:502764/134‑1 (MQ=255)
ggCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g > 2:254693/1‑117 (MQ=255)
ggCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g < 1:254693/117‑1 (MQ=255)
ccGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGc < 1:221004/134‑1 (MQ=255)
gCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg < 2:132146/118‑1 (MQ=255)
gCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACg > 1:132146/1‑118 (MQ=255)
cTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAg > 2:762807/1‑116 (MQ=255)
cTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAg < 1:762807/116‑1 (MQ=255)
gtagATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACg > 2:948959/1‑134 (MQ=255)
gtagATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACg > 2:150650/1‑134 (MQ=255)
aTGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGt < 1:948959/134‑1 (MQ=255)
aTGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGt < 2:370227/134‑1 (MQ=255)
ccGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAgcc > 1:179747/1‑134 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGga > 1:758992/1‑86 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGga < 2:758992/86‑1 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g > 1:175699/1‑70 (MQ=255)
gTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑g < 2:175699/70‑1 (MQ=255)
gCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAaca > 2:789322/1‑134 (MQ=255)
ggTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa > 1:200801/1‑73 (MQ=255)
ggTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGa < 2:200801/73‑1 (MQ=255)
tttCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGcc > 1:326646/1‑134 (MQ=255)
aTTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTc > 1:149601/1‑123 (MQ=255)
aTTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTc < 2:149601/123‑1 (MQ=255)
ttCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCAcc < 2:453277/124‑1 (MQ=255)
ttCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCAcc > 1:453277/1‑124 (MQ=255)
ttCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCt > 1:757962/1‑132 (MQ=255)
agagGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCg < 2:503950/63‑1 (MQ=255)
agagGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCg > 1:503950/1‑63 (MQ=255)
gagGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACcgcg < 2:757962/134‑1 (MQ=255)
cgcAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGt < 2:180314/73‑1 (MQ=255)
cgcAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGt > 1:180314/1‑73 (MQ=255)
aaGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACg > 2:389319/1‑134 (MQ=255)
aGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGc > 1:408947/1‑134 (MQ=255)
ggCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCt > 1:739905/1‑134 (MQ=255)
cGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCcg > 1:527198/1‑134 (MQ=255)
|
GCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCG > AM260480/2843461‑2843706
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGGCCCGCCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACAAG > AM260480/2843439‑2843728
|
gacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGG < GWNJ‑0478:712:GW2002102894th:2:1111:13177:34224/93‑1 (MQ=60)
acgagatgtagctccgtctcgtgggctcggagatgtgtataagagacagcgcgCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGG < GWNJ‑0478:712:GW2002102894th:2:1113:18735:61793/97‑1 (MQ=60)
GGGCCCGCCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGG < GWNJ‑0478:712:GW2002102894th:2:1214:11897:51348/150‑1 (MQ=60)
gtgggctcggagatgtgtataagagacaGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTC < GWNJ‑0478:712:GW2002102894th:2:2203:18878:15299/122‑1 (MQ=60)
CAGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGG < GWNJ‑0478:712:GW2002102894th:2:1116:10263:78346/150‑1 (MQ=60)
atacggtttattttatgtttagattttatttttttttttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtataagagacaGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGG < GWNJ‑0478:712:GW2002102894th:2:2210:8356:37583/43‑1 (MQ=60)
CGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCAC < GWNJ‑0478:712:GW2002102894th:2:2115:4472:35495/150‑1 (MQ=60)
ggatgtcGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACct > GWNJ‑0478:712:GW2002102894th:2:1109:17894:80005/8‑148 (MQ=60)
gcttgttcccttgtgccgcatgtctgcattcttatttttttttttcaagcagaagacggcatacgagatgtagctccgtctcgtgggctcggagatgtgtacaagagacagGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCC < GWNJ‑0478:712:GW2002102894th:2:1204:19989:54266/39‑1 (MQ=60)
acagGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCG < GWNJ‑0478:712:GW2002102894th:2:2116:17530:10556/146‑1 (MQ=60)
GCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGG < GWNJ‑0478:712:GW2002102894th:2:1115:16204:87640/150‑1 (MQ=60)
ctactacgagcgtgtgggcacGCCCGGCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGtgtctcttatacac > GWNJ‑0478:712:GW2002102894th:2:1208:1937:16329/22‑135 (MQ=60)
TAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCC > GWNJ‑0478:712:GW2002102894th:2:1113:19024:57773/1‑150 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTgtctcttatacacatctccgagcccacgagacggagctacaactcgtatgccgt > GWNJ‑0478:712:GW2002102894th:2:1214:12772:18487/1‑96 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGctgtctcttatacacatctccgagcccacgagacggagctacatctcgt > GWNJ‑0478:712:GW2002102894th:2:1113:10276:35578/1‑100 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGctgtctcttatacacatctccgagcccacgagac > GWNJ‑0478:712:GW2002102894th:2:2114:13754:89421/1‑116 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑Ggatctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctg > GWNJ‑0478:712:GW2002102894th:2:1102:11899:61045/1‑85 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑Ggatctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctg > GWNJ‑0478:712:GW2002102894th:2:1202:19765:23295/1‑85 (MQ=60)
GTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑Ggatatgggctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtc > GWNJ‑0478:712:GW2002102894th:2:2103:8874:39411/1‑85 (MQ=60)
CATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAAC < GWNJ‑0478:712:GW2002102894th:2:2210:14954:98440/150‑1 (MQ=60)
GACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCctgttctcttatacacatctccgagcccacgagacggagctacatct > GWNJ‑0478:712:GW2002102894th:2:1112:15481:77458/1‑103 (MQ=60)
CATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCT > GWNJ‑0478:712:GW2002102894th:2:1204:19385:73978/1‑150 (MQ=60)
GTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTC > GWNJ‑0478:712:GW2002102894th:2:1111:14302:82120/1‑150 (MQ=60)
TTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTC > GWNJ‑0478:712:GW2002102894th:2:1212:6356:23142/1‑148 (MQ=60)
TTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTC > GWNJ‑0478:712:GW2002102894th:2:2114:19907:83327/1‑148 (MQ=60)
GCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtc > GWNJ‑0478:712:GW2002102894th:2:1214:1371:90841/1‑93 (MQ=60)
TCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaacaaagaaaaaaagcaaaacagacagt > GWNJ‑0478:712:GW2002102894th:2:1206:12604:18598/1‑45 (MQ=60)
TCGGGATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCtgtctcttatacacatctccgagcccacgagacggagctacatctc > GWNJ‑0478:712:GW2002102894th:2:1113:8258:61197/1‑104 (MQ=60)
GATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCT > GWNJ‑0478:712:GW2002102894th:2:1211:21082:77399/1‑150 (MQ=60)
ATAGAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTC > GWNJ‑0478:712:GW2002102894th:2:2115:8776:83138/1‑150 (MQ=60)
GAGGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGC > GWNJ‑0478:712:GW2002102894th:2:2101:16819:28933/1‑150 (MQ=60)
GGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCtgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttga > GWNJ‑0478:712:GW2002102894th:2:2109:11535:67132/1‑83 (MQ=60)
GGGTGCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGG > GWNJ‑0478:712:GW2002102894th:2:1207:18244:60498/1‑150 (MQ=60)
GCGCAAGGCCGGCATGGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCtgtctcttatacacatctccgagcccacgagacggagctacatctcgtat > GWNJ‑0478:712:GW2002102894th:2:1206:17743:77942/1‑100 (MQ=60)
atgGATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACA < GWNJ‑0478:712:GW2002102894th:2:1209:11065:66870/147‑1 (MQ=60)
G‑GATATGTGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCctgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaaaaaatt > GWNJ‑0478:712:GW2002102894th:2:2114:17152:101104/1‑69 (MQ=60)
G‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCtgtctcttatacacatctccgagcccacgagacggagctacatctcgtatgccgtcttctgcttgaaaaaaaaa > GWNJ‑0478:712:GW2002102894th:2:1201:15644:74698/1‑75 (MQ=60)
G‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACAct > GWNJ‑0478:712:GW2002102894th:2:2113:10499:19504/1‑148 (MQ=60)
|
GGGCCCGCCGTGCAGGAACACCGCCGGCTTGGCGCCGGGCGTGCCCACACGCTCGTAGTAGATGACATGCCCGTCGCCGACATCCAGCGTGCCGGTTTCATAGGGCTCGATTTCGGGATAGAGGGTGCGCAAGGCCGGCAT‑GATATGGGTCTACGGAGATCGGGAGCCACAGTGTACGCCGGAGGGAACGTCAAACAGTAGCCCGCCCCTTAACCGGCGAACACCGCCTTCACCCAGTCCCTCAGCAACCGCGTGGCGGGACGCTCCGCGGCGCGCTCGCTGTAGACAAG > AM260480/2843439‑2843728
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
