Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
149 |
26.7 |
2337422 |
87.5% |
2045244 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
1,326,761 |
+G |
intergenic (+62/‑108) |
h16_B1172 → / → h16_B1173 |
Amidase/MFS transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 1,326,760 | 1 | . | G | 100.0%
| 106.9
/ NA
| 28 | intergenic (+61/‑109) | h16_B1172/h16_B1173 | Amidase/MFS transporter |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (14/14); total (14/14) |
GCAGGCCTTGCGCGCGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑C‑GACAC‑GCGGCGACAA‑GTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGATGGCATCG > AM260480/1326648‑1326881
|
gCAGGCCTTGCGCGCGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGa > 1:473848/1‑134 (MQ=255)
ccTTGCGCGCGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGCTG‑GACACGGCGGCGACAAGGTCGCGAACATAGCGCGACAAcc > 1:828772/1‑134 (MQ=255)
ccggccgCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACgaggag > 2:765815/1‑134 (MQ=255)
ccggccgCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACgaggag > 2:695710/1‑134 (MQ=255)
ccggccgCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACgaggag > 2:518028/1‑134 (MQ=255)
ggccgCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACg > 1:584813/1‑127 (MQ=255)
ggccgCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACg < 2:584813/127‑1 (MQ=255)
ccgcATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACa > 1:425455/1‑133 (MQ=255)
cgcATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACaaa < 1:765815/134‑1 (MQ=255)
tgcggCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAA‑g < 1:297847/80‑1 (MQ=255)
tgcggCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAA‑g > 2:297847/5‑84 (MQ=255)
gcTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGaaa > 1:120217/1‑132 (MQ=255)
aaTAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACagtagt < 2:412051/134‑1 (MQ=255)
gcgcgcgcCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAAt < 1:824455/134‑1 (MQ=255)
cgcgcCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGc < 1:343278/134‑1 (MQ=255)
cGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAAc < 2:668844/86‑1 (MQ=255)
cGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCCAAAc > 1:668844/1‑86 (MQ=255)
ctctACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCt < 1:592731/133‑1 (MQ=255)
tACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGAc > 2:869742/1‑134 (MQ=255)
tACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGAc > 2:508146/1‑134 (MQ=255)
aCAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGAcc > 2:425005/1‑134 (MQ=255)
cAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGAc < 1:695710/132‑1 (MQ=255)
cAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCg < 2:544283/134‑1 (MQ=255)
aaaCGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCgg < 2:425455/134‑1 (MQ=255)
cggACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCatggatg < 1:869742/132‑1 (MQ=255)
cggACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCatggatg < 1:508146/132‑1 (MQ=255)
ggACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCatggatgg > 2:567301/2‑134 (MQ=255)
cggcggcgACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGATGGCATCg < 1:518028/132‑1 (MQ=255)
gcgACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCt < 2:902373/106‑1 (MQ=255)
gcgACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCt > 1:902373/1‑106 (MQ=255)
|
GCAGGCCTTGCGCGCGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑C‑GACAC‑GCGGCGACAA‑GTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGATGGCATCG > AM260480/1326648‑1326881
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATACGGCTGGCCTATGCGGCCGAGCAGGCCTTGCGCGCGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑C‑GACAC‑GCGGCGACAA‑GTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGATGGCATCGGGGTGACGGCATCGCACAAGAAGATCAT > AM260480/1326624‑1326909
|
GATACGGCTGGCCTATGCGGCCGAGCAGGCCTTGCGCGCGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGAC < GWNJ‑0478:712:GW2002102894th:2:2213:15570:97780/149‑1 (MQ=60)
gtgtctcgtgggctcggagatgtgtataagagacaggatacggctggcctatgcgGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCG < GWNJ‑0478:712:GW2002102894th:2:1201:11950:87345/95‑1 (MQ=60)
GGCCTATGCGGCCGAGCAGGCCTTGCGCGCGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGAC > GWNJ‑0478:712:GW2002102894th:2:1213:8027:18229/1‑150 (MQ=60)
ATGCGGCCGAGCAGGCCTTGCGCGCGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGCTG‑GACACGGCGGCGACAAGGTCGCGAACATAGCGCGACAACCT > GWNJ‑0478:712:GW2002102894th:2:2114:3405:9221/1‑150 (MQ=60)
CCTTGCGCGCGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGG > GWNJ‑0478:712:GW2002102894th:2:2101:3994:66079/1‑148 (MQ=60)
ttccaGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAA > GWNJ‑0478:712:GW2002102894th:2:1209:10154:61706/6‑149 (MQ=60)
CCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAAC < GWNJ‑0478:712:GW2002102894th:2:2113:13315:4932/150‑1 (MQ=60)
GCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAAC > GWNJ‑0478:712:GW2002102894th:2:1108:6118:44350/1‑148 (MQ=60)
ttttttttgttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGT < GWNJ‑0478:712:GW2002102894th:2:1213:11690:25975/62‑1 (MQ=60)
GGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCCAAACGAGGAGGAGACAAAGctgtctcttatacacatctccgagcccacgagac > GWNJ‑0478:712:GW2002102894th:2:2107:19483:75775/1‑116 (MQ=60)
GGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCAC < GWNJ‑0478:712:GW2002102894th:2:2115:19165:88838/150‑1 (MQ=60)
GCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGC < GWNJ‑0478:712:GW2002102894th:2:1205:5758:77774/150‑1 (MQ=60)
gagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATG < GWNJ‑0478:712:GW2002102894th:2:1116:4824:97563/103‑1 (MQ=60)
GCTCTACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGA < GWNJ‑0478:712:GW2002102894th:2:2103:9486:17041/149‑1 (MQ=60)
ACAAACGCCCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGATGGC < GWNJ‑0478:712:GW2002102894th:2:2108:19320:34210/148‑1 (MQ=60)
CCGC‑CGGACACGGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGActgtctcttatac > GWNJ‑0478:712:GW2002102894th:2:2202:16766:6545/1‑136 (MQ=60)
ccggacacgGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGATGGCATCGGGGTGACGG < GWNJ‑0478:712:GW2002102894th:2:1212:13112:90041/141‑1 (MQ=60)
ccggacacgGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGATGGCATCGGGGTGACGG < GWNJ‑0478:712:GW2002102894th:2:2116:18438:100762/141‑1 (MQ=60)
acgGCGGCGACAAGGTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGATGGCATCGGGGTGACGGCATCGC < GWNJ‑0478:712:GW2002102894th:2:1215:3474:35808/147‑1 (MQ=60)
GTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttgaaaaaaaaaaaaaaaaaaaaca > GWNJ‑0478:712:GW2002102894th:2:1213:18276:9822/1‑61 (MQ=60)
|
GATACGGCTGGCCTATGCGGCCGAGCAGGCCTTGCGCGCGCGCCGGCCGCCGCATTCGACGCCGGCGCTGGAATAGGCGCGCGCCGGAACGACGTTTTATCGCTGCTCTACAAACGCCCGC‑C‑GACAC‑GCGGCGACAA‑GTCGCGGACATAGCGCGACAACCTCGAAACGAGGAGGAGACAAAGATGGGCGCAGAAACAGTAGTTCAATCGCCGAATTCCCCACAGCAGCATGAGCTCGACCGGGCCATGGATGGCATCGGGGTGACGGCATCGCACAAGAAGATCAT > AM260480/1326624‑1326909
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
