Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
149 |
26.7 |
2337422 |
87.5% |
2045244 |
105.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
AM260480 |
2,063,918 |
G→A |
P215L (CCG→CTG) |
h16_B1826 ← |
Acyl‑CoA dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | AM260480 | 2,063,918 | 0 | G | A | 100.0%
| 149.5
/ NA
| 39 | P215L (CCG→CTG) | h16_B1826 | Acyl‑CoA dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (21/18); total (21/18) |
GCGCATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCGGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCGCGCCATCAGGATGCCGGCGC > AM260480/2063788‑2064044
|
gcgcATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCa < 1:1167844/134‑1 (MQ=255)
aTGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATgg > 1:516633/1‑133 (MQ=255)
aTGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATgg > 1:360947/1‑133 (MQ=255)
tGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGaa > 1:937636/1‑134 (MQ=255)
tGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGaa > 1:1058736/1‑134 (MQ=255)
aTGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGt < 2:516633/134‑1 (MQ=255)
gcCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAg > 1:859506/1‑134 (MQ=255)
gCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGa < 2:574747/134‑1 (MQ=255)
ccTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCgg < 2:360947/134‑1 (MQ=255)
tGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGAt > 1:177104/1‑134 (MQ=255)
ccTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTg < 2:459222/86‑1 (MQ=255)
ccTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTg > 1:459222/1‑86 (MQ=255)
cTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGt < 2:177104/134‑1 (MQ=255)
tCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTc > 1:697577/1‑134 (MQ=255)
cACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGAcc < 2:859506/133‑1 (MQ=255)
cccAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCgg > 1:720093/1‑102 (MQ=255)
cccAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCgg < 2:720093/102‑1 (MQ=255)
cTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTgcgcgc < 2:697577/134‑1 (MQ=255)
aCGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCAc > 1:76810/1‑133 (MQ=255)
gcgcAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGa > 2:884196/1‑74 (MQ=255)
gcgcAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGa < 1:884196/74‑1 (MQ=255)
cAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGt > 1:600193/1‑95 (MQ=255)
cAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGt < 2:600193/95‑1 (MQ=255)
cAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGc > 2:683873/1‑134 (MQ=255)
gATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTgcgcg < 2:76810/134‑1 (MQ=255)
cAGGACCTGCGCATGTCCGCCCAGCATGGAACAGTCGAt > 2:1104221/1‑39 (MQ=255)
cAGGACCTGCGCATGTCCGCCCAGCATGGAACAGTCGAt < 1:1104221/39‑1 (MQ=255)
ccTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCGCGCCATCAg > 1:317851/1‑133 (MQ=255)
tGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGa < 2:427160/52‑1 (MQ=255)
tGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGa > 1:427160/1‑52 (MQ=255)
tGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGc < 1:661388/56‑1 (MQ=255)
tGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGc > 2:661388/1‑56 (MQ=255)
tGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGAcc > 1:1046383/1‑75 (MQ=255)
tGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGAcc < 2:1046383/75‑1 (MQ=255)
tGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCGCGCCATCAGGATGCCGgc > 2:666300/1‑134 (MQ=255)
tGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCGCGCCATCAGGATGCCGgc > 1:1010450/1‑134 (MQ=255)
tCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCGCGCCATCAGGATGCCGgcgc < 2:1010450/134‑1 (MQ=255)
cGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTgcgcgcgc > 1:908853/1‑95 (MQ=255)
cGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTgcgcgcgc < 2:908853/95‑1 (MQ=255)
|
GCGCATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCGGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCGCGCCATCAGGATGCCGGCGC > AM260480/2063788‑2064044
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCCCGAACCAGCGCATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCGGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCGCGCCATCAGGATGCCGGCGCTGG > AM260480/2063777‑2064047
|
CCCCCGAACCAGCGCATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGA > GWNJ‑0478:712:GW2002102894th:2:1204:15888:86752/1‑149 (MQ=60)
CCCCCGAACCAGCGCATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGA > GWNJ‑0478:712:GW2002102894th:2:1215:14587:29590/1‑149 (MQ=60)
CCCCGAACCAGCGCATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAAC > GWNJ‑0478:712:GW2002102894th:2:2210:13099:91721/1‑150 (MQ=60)
CCCCGAACCAGCGCATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAAC > GWNJ‑0478:712:GW2002102894th:2:2205:4605:22933/1‑150 (MQ=60)
CCCCGAACCAGCGCATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAAC < GWNJ‑0478:712:GW2002102894th:2:2111:12002:59178/150‑1 (MQ=60)
ttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAAC < GWNJ‑0478:712:GW2002102894th:2:1212:3183:48384/71‑1 (MQ=60)
AGCGCATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGG < GWNJ‑0478:712:GW2002102894th:2:2216:17628:97100/150‑1 (MQ=60)
CAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGC > GWNJ‑0478:712:GW2002102894th:2:2116:14610:52636/1‑150 (MQ=60)
ttttgtgccgtgttttccttaccagtttttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGC < GWNJ‑0478:712:GW2002102894th:2:1115:8863:4192/41‑1 (MQ=60)
ttttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacagGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACAGTCGATGGTGTCAAGCAGGCG < GWNJ‑0478:712:GW2002102894th:2:2214:20297:14453/69‑1 (MQ=60)
GGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATC > GWNJ‑0478:712:GW2002102894th:2:1110:20609:56796/1‑150 (MQ=60)
agattagcgagtgtctcgtgggctcggagatgtgtataagagacagatgctgggcggacatGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGAT < GWNJ‑0478:712:GW2002102894th:2:2201:4933:95241/89‑1 (MQ=60)
GCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCctgtctcttatacacatctccgagcccacgagac > GWNJ‑0478:712:GW2002102894th:2:1210:19320:42061/1‑116 (MQ=60)
agcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTC < GWNJ‑0478:712:GW2002102894th:2:2107:9986:34565/87‑1 (MQ=60)
GCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCG > GWNJ‑0478:712:GW2002102894th:2:2108:12705:44515/1‑150 (MQ=60)
ttttttttttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAAC < GWNJ‑0478:712:GW2002102894th:2:1108:1559:39689/72‑1 (MQ=60)
CCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCctgtctcttatacacatc > GWNJ‑0478:712:GW2002102894th:2:2109:10638:67439/1‑132 (MQ=60)
tttttcaagcagaagacggcatacgagattagcgagtgtctcgtgggctcggagatgtgtataagagacaGGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGG < GWNJ‑0478:712:GW2002102894th:2:1213:3431:49130/79‑1 (MQ=60)
ACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACC > GWNJ‑0478:712:GW2002102894th:2:1104:15612:88101/1‑149 (MQ=60)
cgagtgtctcgtgggctcggagatgtgtataagagacagGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCAT < GWNJ‑0478:712:GW2002102894th:2:1102:13109:38943/111‑1 (MQ=60)
GTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGctgtctcttatacacatctccgagc > GWNJ‑0478:712:GW2002102894th:2:2103:16566:62920/1‑125 (MQ=60)
GGCCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCGCGCCATCAGG > GWNJ‑0478:712:GW2002102894th:2:1202:8268:15967/1‑149 (MQ=60)
CCGTCGATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATctgtctcttatacacatctccgagcccacgagacactcgctaatctcgtatgccgtcttctgcttga > GWNJ‑0478:712:GW2002102894th:2:1209:4361:71806/1‑82 (MQ=60)
ATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCctgtctcttatacacatctccgagcccacgagacactcgctaatc > GWNJ‑0478:712:GW2002102894th:2:2210:2854:27537/1‑105 (MQ=60)
ATCAGGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCGCGCCATCAGGATGCCGGCG > GWNJ‑0478:712:GW2002102894th:2:2208:20257:36244/1‑150 (MQ=60)
GGACCTGCGCATGTCCGCCCAGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCtgtctcttatacacatctccgagc > GWNJ‑0478:712:GW2002102894th:2:2202:7151:47056/1‑126 (MQ=60)
|
CCCCCGAACCAGCGCATGCAATGCGACAGCCGCGCCGGCGACAAGCGAACCTGCGCATAACGGAAGCCCTCGTCCACCTCGCCCAGCACCTGGTCCTGCGGCACGCGCAGGCCGTCGATCAGGACCTGCGCATGTCCGCCCGGCATGGAACTGTCGATGGTGTCAAGCAGGCGTTCGATGCGGATCGCCGGATGGGGCAGGTCGACCAGGAACATGGTGGCCTGCGCGCGCTCACCATCGCCGGTGCGCGCCATCAGGATGCCGGCGCTGG > AM260480/2063777‑2064047
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
