Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 150 26.0 2053212 90.0% 1847890 107.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AM260480 2,912,452 Δ39 bp intergenic (+243/–) h16_B2579 → / – cold shock protein, DNA‑binding/–

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AM260480 2912452 2912490 39 36 [0] [0] NA h16_B2579/– cold shock protein, DNA‑binding/–

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260480 1 =0 (0.000)21 (1.210) 15/136 0.2 100% intergenic (–/‑1344) –/pA2 –/replication initiation protein RepA
?AM260480 = 2912451 0 (0.000)intergenic (+242/–) h16_B2579/– cold shock protein, DNA‑binding/–

GATK/CNVnator alignment

N/A