Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 146 27.9 2327082 89.7% 2087392 107.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC AM260479 973,838 Δ1,320 bp [h16_A0881]–h16_A0882 [h16_A0881], h16_A0882

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AM260479 973838–974895 975157 263–1320 45 [0] [0] 45 [h16_A0881]–h16_A0882 [h16_A0881],h16_A0882

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AM260479 = 973837NA (NA)42 (1.710) 29/192 0.1 NA noncoding (2/1312 nt) ISAE1 insertion sequence ISAE1 isolog
?AM260479 975158 = NA (NA)intergenic (‑201/+329) h16_A0881/h16_A0883 ISAE1 Orf2 fusion protein/Hypothetical protein

GATK/CNVnator alignment

N/A