mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 38 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,254,698 | 0 | A | C | 70.8% | 34.5 / 19.0 | 24 | L512R (CTG→CGG) | dauA | C4‑dicarboxylic acid transporter DauA |
| * | NZ_CP009273 | 497,020 | 0 | A | C | 68.4% | 7.0 / 17.1 | 19 | *559E (TAA→GAA) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 60.0% | ‑4.8 / 13.0 | 15 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,000,104 | 0 | T | A | 58.8% | ‑2.0 / 18.2 | 17 | N243K (AAT→AAA) | ycbF | fimbrial chaperone |
| * | NZ_CP009273 | 3,518,384 | 0 | A | G | 58.3% | 3.7 / 12.2 | 13 | T719A (ACC→GCC) | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| * | NZ_CP009273 | 276,021 | 0 | A | G | 57.5% | 17.5 / 64.9 | 47 | pseudogene (53/249 nt) | BW25113_RS01360 | transposase |
| * | NZ_CP009273 | 3,856,028 | 0 | A | G | 56.5% | 6.2 / 19.1 | 23 | pseudogene (936/1617 nt) | BW25113_RS19145 | PTS sugar transporter subunit IIB |
| * | NZ_CP009273 | 1,000,081 | 0 | T | G | 56.2% | 9.4 / 17.6 | 16 | L236V (TTG→GTG) | ycbF | fimbrial chaperone |
| * | NZ_CP009273 | 1,561,995 | 0 | A | T | 56.2% | 4.6 / 21.5 | 16 | V362V (GTT→GTA) | digH | glycoside hydrolase family 10 protein |
| * | NZ_CP009273 | 497,036 | 0 | A | C | 55.6% | 5.6 / 16.4 | 18 | G553G (GGT→GGG) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 3,597,092 | 0 | A | C | 55.6% | 7.7 / 10.6 | 9 | V171G (GTT→GGT) | ftsY | signal recognition particle‑docking protein FtsY |
| * | NZ_CP009273 | 3,597,095 | 0 | A | C | 55.6% | 6.5 / 10.5 | 9 | V170G (GTG→GGG) | ftsY | signal recognition particle‑docking protein FtsY |
| * | NZ_CP009273 | 4,368,619 | 0 | A | C | 55.6% | 3.7 / 10.2 | 9 | V48G (GTA→GGA) | ampC | BlaEC family class C beta‑lactamase |
| * | NZ_CP009273 | 3,571,647 | 0 | T | C | 55.0% | 8.2 / 24.1 | 20 | E147G (GAA→GGA) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 334,265 | 0 | A | G | 54.8% | ‑6.6 / 46.4 | 31 | H77R (CAT→CGT) | yahG | DUF1116 domain‑containing protein |
| * | NZ_CP009273 | 4,116,138 | 0 | T | G | 53.8% | 4.4 / 11.7 | 13 | T201P (ACC→CCC) | priA | primosomal protein N' |
| * | NZ_CP009273 | 324,514 | 0 | T | G | 53.6% | 20.1 / 42.5 | 28 | T178P (ACC→CCC) | betI | transcriptional regulator BetI |
| * | NZ_CP009273 | 4,269,399 | 0 | T | G | 53.3% | 12.6 / 18.1 | 15 | G331G (GGT→GGG) | ghxP | guanine/hypoxanthine transporter GhxP |
| * | NZ_CP009273 | 1,000,088 | 0 | C | G | 52.9% | 5.6 / 20.7 | 17 | A238G (GCA→GGA) | ycbF | fimbrial chaperone |
| * | NZ_CP009273 | 645,916 | 0 | T | G | 52.2% | 26.4 / 34.7 | 23 | T11P (ACT→CCT) | citE | citrate (pro‑3S)‑lyase subunit beta |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 354933 = | 57 (2.440) | 3 (0.150) | 3/222 | 1.9 | 7.1% | coding (424/660 nt) | cynT | carbonic anhydrase CynT |
| ? | NZ_CP009273 | 355091 = | 28 (1.360) | coding (582/660 nt) | cynT | carbonic anhydrase CynT | |||||
| * | ? | NZ_CP009273 | 297244 = | 38 (1.630) | 3 (0.140) | 3/232 | 2.0 | 8.1% | coding (355/957 nt) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| ? | NZ_CP009273 | 297355 = | 33 (1.540) | coding (244/957 nt) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB | |||||