mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 91 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,623,151 | 0 | A | G | 67.6% | 35.6 / 33.9 | 37 | I271T (ATC→ACC) | yhiI | HlyD family efflux transporter periplasmic adaptor subunit |
| * | NZ_CP009273 | 324,502 | 0 | A | G | 65.0% | ‑4.7 / 15.0 | 20 | S182P (TCC→CCC) | betI | transcriptional regulator BetI |
| * | NZ_CP009273 | 324,514 | 0 | T | G | 63.2% | ‑2.6 / 17.6 | 19 | T178P (ACC→CCC) | betI | transcriptional regulator BetI |
| * | NZ_CP009273 | 365,163 | 0 | C | T | 59.3% | 16.6 / 29.1 | 27 | S218S (AGC→AGT) | mhpB | 3‑carboxyethylcatechol 2,3‑dioxygenase |
| * | NZ_CP009273 | 1,108,471 | 0 | T | C | 58.6% | 11.5 / 34.5 | 29 | I718T (ATC→ACC) | mdoH | glucans biosynthesis glucosyltransferase MdoH |
| * | NZ_CP009273 | 3,845,188 | 0 | C | T | 58.0% | 32.7 / 62.3 | 50 | P319P (CCG→CCA) | ilvB | acetolactate synthase large subunit |
| * | NZ_CP009273 | 2,145,073 | 0 | G | T | 57.9% | ‑2.0 / 22.7 | 19 | L136F (TTG→TTT) | yegJ | DUF2314 domain‑containing protein |
| * | NZ_CP009273 | 4,054,309 | 0 | A | G | 57.6% | 6.8 / 43.5 | 33 | E168G (GAA→GGA) | yihL | GntR family transcriptional regulator |
| * | NZ_CP009273 | 324,518 | 0 | A | T | 57.1% | ‑3.2 / 18.4 | 21 | D176E (GAT→GAA) | betI | transcriptional regulator BetI |
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 56.7% | 1.3 / 34.5 | 30 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,380,362 | 0 | C | T | 54.8% | 7.3 / 37.5 | 31 | intergenic (+52/‑51) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| * | NZ_CP009273 | 2,145,146 | 0 | G | T | 54.5% | 2.6 / 12.8 | 11 | intergenic (+19/+46) | yegJ/pphC | DUF2314 domain‑containing protein/protein‑serine/threonine phosphatase PphC |
| * | NZ_CP009273 | 1,267,278 | 0 | T | G | 53.3% | 11.7 / 22.4 | 15 | T10P (ACC→CCC) | chaA | sodium‑potassium/proton antiporter ChaA |
| * | NZ_CP009273 | 2,940,921 | 0 | C | . | 53.1% | 40.9 / 67.9 | 32 | noncoding (66/77 nt) | BW25113_RS14640 | tRNA‑Met |
| * | NZ_CP009273 | 2,145,062 | 0 | G | T | 52.9% | 5.3 / 19.1 | 18 | D133Y (GAT→TAT) | yegJ | DUF2314 domain‑containing protein |
| * | NZ_CP009273 | 2,145,070 | 0 | A | T | 52.6% | 8.9 / 27.1 | 19 | L135F (TTA→TTT) | yegJ | DUF2314 domain‑containing protein |
| * | NZ_CP009273 | 3,088,058 | 0 | C | . | 52.5% | 58.5 / 90.5 | 40 | coding (382/981 nt) | yggR | type IV pilus twitching motility protein PilT |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 52.2% | 9.8 / 32.7 | 23 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 3,199,794 | 0 | C | T | 51.8% | 14.2 / 37.5 | 27 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NZ_CP009273 | 655,396 | 0 | T | A | 50.0% | 12.4 / 11.3 | 22 | I93F (ATT→TTT) | lipA | lipoyl synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4603073 | 39 (1.020) | 4 (0.110) | 4/218 | 2.7 | 10.6% | coding (846/1074 nt) | yjjU | patatin family protein |
| ? | NZ_CP009273 | = 4603185 | 32 (0.910) | coding (958/1074 nt) | yjjU | patatin family protein | |||||
| * | ? | NZ_CP009273 | = 3822450 | 55 (1.440) | 3 (0.080) | 3/220 | 3.0 | 5.1% | coding (146/1392 nt) | xanP | xanthine/proton symporter XanP |
| ? | NZ_CP009273 | = 3823037 | 61 (1.730) | coding (733/1392 nt) | xanP | xanthine/proton symporter XanP | |||||