mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 61.5% | 0.5 / 17.1 | 13 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 2,955,854 | 0 | T | G | 60.0% | 11.4 / 18.6 | 20 | S90S (TCA→TCC) | ppdC | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 60.0% | ‑5.4 / 12.8 | 20 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 56.2% | 3.4 / 12.7 | 16 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 536,021 | 0 | A | T | 56.2% | ‑1.3 / 11.1 | 16 | M1M (ATG→TTG) † | ybbY | uracil/xanthine transporter |
| * | NZ_CP009273 | 3,679,388 | 0 | T | C | 56.2% | 6.4 / 14.4 | 16 | E1049G (GAG→GGG) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| * | NZ_CP009273 | 2,356,900 | 0 | T | C | 53.8% | 5.3 / 13.8 | 13 | G71G (GGA→GGG) | yfaY | nicotinamide mononucleotide deamidase‑related protein YfaY |
| * | NZ_CP009273 | 3,571,657 | 0 | G | A | 53.8% | 5.2 / 11.5 | 13 | P144S (CCC→TCC) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 3,571,661 | 0 | A | C | 53.8% | 11.1 / 15.0 | 13 | G142G (GGT→GGG) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 2,832,718 | 0 | T | G | 53.3% | 12.3 / 13.7 | 15 | intergenic (‑95/‑165) | ascG/ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| * | NZ_CP009273 | 4,297,122 | 0 | A | C | 52.2% | 26.3 / 31.3 | 23 | G165G (GGT→GGG) | alsK | allose kinase |
| * | NZ_CP009273 | 3,734,269 | 0 | T | G | 51.8% | 26.8 / 37.5 | 27 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate transaminase |
| * | NZ_CP009273 | 4,292,475 | 0 | T | G | 51.7% | 35.1 / 38.2 | 29 | T141P (ACC→CCC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 3,806,632 | 0 | C | T | 41.4% | 16.1 / 12.5 | 29 | S181L (TCG→TTG) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |