mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,598,484 | 0 | A | G | 58.3% | 7.1 / 12.4 | 12 | I61V (ATC→GTC) | lsrD | autoinducer 2 ABC transporter permease LsrD |
| * | NZ_CP009273 | 3,401,190 | 0 | C | G | 58.3% | 5.8 / 13.3 | 12 | G75G (GGC→GGG) | panF | sodium/pantothenate symporter |
| * | NZ_CP009273 | 4,081,789 | 0 | T | G | 57.9% | 10.4 / 19.6 | 19 | H476P (CAC→CCC) | frvR | putative frv operon regulatory protein |
| * | NZ_CP009273 | 2,458,980 | 0 | T | G | 57.1% | 9.6 / 12.5 | 14 | G67G (GGT→GGG) | yfdC | formate/nitrite transporter family protein |
| * | NZ_CP009273 | 3,837,579 | 0 | T | G | 56.2% | 7.3 / 17.6 | 16 | F86V (TTT→GTT) | adeD | adenine deaminase |
| * | NZ_CP009273 | 536,014 | 0 | T | G | 54.5% | 4.2 / 10.2 | 11 | intergenic (+50/‑7) | allB/ybbY | allantoinase AllB/uracil/xanthine transporter |
| * | NZ_CP009273 | 3,175,960 | 0 | G | T | 54.5% | 1.3 / 11.0 | 11 | G18C (GGC→TGC) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 3,941,183 | 0 | T | G | 54.5% | 14.1 / 23.3 | 22 | T49P (ACC→CCC) | hdfR | HTH‑type transcriptional regulator HdfR |
| * | NZ_CP009273 | 4,186,009 | 0 | T | G | 54.5% | 6.5 / 10.6 | 11 | T7P (ACC→CCC) | thiC | phosphomethylpyrimidine synthase ThiC |
| * | NZ_CP009273 | 590,295 | 0 | A | T | 53.8% | 0.7 / 12.8 | 13 | I202N (ATC→AAC) | cusR | copper response regulator transcription factor CusR |
| * | NZ_CP009273 | 879,397 | 0 | T | G | 53.8% | 10.0 / 14.7 | 13 | V90G (GTG→GGG) | mdfA | multidrug efflux MFS transporter MdfA |
| * | NZ_CP009273 | 2,610,029 | 0 | A | G | 53.8% | 3.5 / 13.6 | 13 | M193V (ATG→GTG) | bepA | beta‑barrel assembly‑enhancing protease |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 53.3% | ‑1.7 / 14.7 | 15 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 53.3% | 0.7 / 14.6 | 15 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 3,734,269 | 0 | T | G | 51.5% | 22.8 / 44.3 | 33 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate transaminase |
| * | NZ_CP009273 | 4,431,979 | 0 | A | T | 42.9% | 18.4 / 10.5 | 21 | D5E (GAT→GAA) | msrA | peptide‑methionine (S)‑S‑oxide reductase MsrA |