mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 371,031 | 0 | T | G | 58.3% | 8.5 / 11.9 | 13 | G39G (GGT→GGG) | mhpT | 3‑(3‑hydroxy‑phenyl)propionate transporter |
| * | NZ_CP009273 | 3,485,389 | 0 | G | T | 55.6% | 5.4 / 13.3 | 9 | Q90K (CAG→AAG) | ppiA | peptidylprolyl isomerase A |
| * | NZ_CP009273 | 2,794,508 | 0 | T | G | 54.5% | 4.2 / 10.7 | 11 | V62G (GTA→GGA) | nrdI | class Ib ribonucleoside‑diphosphate reductase assembly flavoprotein NrdI |
| * | NZ_CP009273 | 3,578,446 | 0 | A | C | 54.5% | 1.7 / 10.3 | 11 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltransferase |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 54.5% | 6.9 / 11.6 | 11 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 499,311 | 0 | A | C | 53.8% | 13.0 / 15.6 | 13 | V281G (GTG→GGG) | fsr | fosmidomycin MFS transporter |
| * | NZ_CP009273 | 4,326,718 | 0 | T | A | 53.8% | 8.0 / 16.8 | 13 | Y44F (TAT→TTT) | adiC | arginine/agmatine antiporter |
| * | NZ_CP009273 | 4,142,237 | 0 | T | G | 53.3% | 7.6 / 12.9 | 16 | T264P (ACC→CCC) | ppc | phosphoenolpyruvate carboxylase |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 52.2% | 3.3 / 25.1 | 23 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 45.5% | 7.7 / 12.8 | 23 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |