mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 64.3% | ‑1.4 / 10.3 | 14 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 262,060 | 0 | C | A | 63.6% | ‑2.3 / 12.7 | 11 | V69F (GTT→TTT) | BW25113_RS25425 | hypothetical protein |
| * | NZ_CP009273 | 4,558,329 | 0 | C | A | 60.0% | ‑1.3 / 18.9 | 15 | R3L (CGT→CTT) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 3,738,379 | 0 | C | G | 58.8% | ‑0.5 / 11.8 | 17 | G72G (GGC→GGG) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 262,051 | 0 | T | G | 58.3% | 6.3 / 11.5 | 12 | T72P (ACC→CCC) | BW25113_RS25425 | hypothetical protein |
| * | NZ_CP009273 | 4,538,749 | 0 | A | T | 57.1% | ‑1.5 / 14.2 | 14 | Y42F (TAT→TTT) | fimH | type 1 fimbria D‑mannose specific adhesin FimH |
| * | NZ_CP009273 | 4,558,343 | 0 | C | A | 57.1% | 5.6 / 19.2 | 14 | intergenic (‑7/‑472) | mdtM/BW25113_RS25845 | multidrug efflux MFS transporter MdtM/Rpn family recombination‑promoting nuclease/putative transposase |
| * | NZ_CP009273 | 883,470 | 0 | T | G | 56.2% | 8.8 / 14.9 | 16 | intergenic (+55/+120) | rcdA/ybjL | DNA‑binding transcriptional regulator RcdA/aspartate:alanine antiporter |
| * | NZ_CP009273 | 4,558,321 | 0 | T | G | 56.2% | 11.4 / 16.5 | 16 | T6P (ACC→CCC) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 2,134,407 | 0 | A | C | 54.5% | 8.8 / 11.9 | 11 | G229G (GGT→GGG) | asmA | outer membrane assembly protein AsmA |
| * | NZ_CP009273 | 2,621,984 | 0 | A | C | 54.5% | 4.7 / 11.0 | 11 | V105G (GTC→GGC) | pdeF | cyclic‑guanylate‑specific phosphodiesterase PdeF |
| * | NZ_CP009273 | 3,348,816 | 0 | A | C | 54.5% | 22.8 / 28.7 | 22 | T245P (ACC→CCC) | gltB | glutamate synthase large subunit |
| * | NZ_CP009273 | 3,454,142 | 0 | A | T | 54.5% | 6.1 / 13.2 | 11 | I323F (ATT→TTT) | gspF | type II secretion system inner membrane protein GspF |
| * | NZ_CP009273 | 4,544,923 | 0 | C | A | 54.5% | 3.2 / 13.5 | 11 | N177K (AAC→AAA) | uxuR | Uxu operon transcriptional regulator |
| * | NZ_CP009273 | 4,544,926 | 0 | T | A | 54.5% | 3.5 / 13.3 | 11 | N178K (AAT→AAA) | uxuR | Uxu operon transcriptional regulator |
| * | NZ_CP009273 | 108,789 | 0 | T | C | 53.8% | 6.9 / 13.4 | 13 | S100G (AGC→GGC) | zapD | cell division protein ZapD |
| * | NZ_CP009273 | 4,292,475 | 0 | T | G | 53.6% | 22.2 / 27.2 | 28 | T141P (ACC→CCC) | mdtO | multidrug efflux transporter permease subunit MdtO |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 53.3% | 7.2 / 13.9 | 15 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 2,255,725 | 0 | A | C | 53.3% | 16.1 / 19.3 | 15 | G40G (GGT→GGG) | fruK | 1‑phosphofructokinase |
| * | NZ_CP009273 | 4,086,499 | 0 | C | A | 53.3% | 2.1 / 19.1 | 15 | V100V (GTG→GTT) | rhaM | L‑rhamnose mutarotase |