mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,336,778 | 0 | T | A | 64.7% | 0.5 / 14.9 | 17 | M291L (ATG→TTG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 3,953,261 | 0 | T | G | 58.8% | 3.5 / 17.0 | 17 | intergenic (‑88/+111) | ppiC/BW25113_RS25790 | peptidylprolyl isomerase PpiC/type II toxin‑antitoxin system PemK/MazF family toxin |
| * | NZ_CP009273 | 4,464,532 | 0 | T | G | 57.1% | 14.5 / 16.2 | 21 | *198G (TGA→GGA) | bdcR | TetR/AcrR family transcriptional regulator |
| * | NZ_CP009273 | 2,336,782 | 0 | G | C | 56.2% | 5.4 / 15.1 | 16 | G289G (GGC→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 890,331 | 0 | C | A | 55.6% | 6.1 / 12.6 | 9 | T364T (ACC→ACA) | potF | spermidine/putrescine ABC transporter substrate‑binding protein PotF |
| * | NZ_CP009273 | 2,897,051 | 0 | C | A | 55.6% | ‑0.2 / 12.7 | 9 | intergenic (+318/+1055) | ygcE/queE | FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
| * | NZ_CP009273 | 3,806,152 | 0 | C | A | 55.6% | 1.5 / 12.0 | 9 | T21N (ACC→AAC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| * | NZ_CP009273 | 68,443 | 0 | T | G | 54.5% | 8.1 / 11.9 | 11 | G202G (GGT→GGG) | yabI | DedA family protein |
| * | NZ_CP009273 | 371,031 | 0 | T | G | 54.5% | 7.1 / 11.5 | 11 | G39G (GGT→GGG) | mhpT | 3‑(3‑hydroxy‑phenyl)propionate transporter |
| * | NZ_CP009273 | 890,370 | 0 | C | G | 54.5% | 3.4 / 11.9 | 11 | intergenic (+18/‑77) | potF/potG | spermidine/putrescine ABC transporter substrate‑binding protein PotF/putrescine ABC transporter ATP‑binding subunit PotG |
| * | NZ_CP009273 | 2,787,831 | 0 | G | C | 54.5% | 6.4 / 13.7 | 11 | D74H (GAT→CAT) | gabP | GABA permease |
| * | NZ_CP009273 | 4,224,171 | 0 | A | C | 54.5% | 0.2 / 10.6 | 11 | P162P (CCA→CCC) | pgi | glucose‑6‑phosphate isomerase |
| * | NZ_CP009273 | 2,388,899 | 0 | A | C | 53.8% | 13.2 / 15.6 | 13 | G159G (GGT→GGG) | nuoJ | NADH‑quinone oxidoreductase subunit J |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 53.8% | 10.6 / 21.7 | 13 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 4,561,000 | 0 | A | C | 53.8% | 8.0 / 11.8 | 13 | V131G (GTG→GGG) | yjiR | PLP‑dependent aminotransferase family protein |
| * | NZ_CP009273 | 3,012,931 | 0 | A | C | 53.3% | 2.5 / 13.2 | 15 | T138P (ACA→CCA) | ssnA | putative aminohydrolase SsnA |
| * | NZ_CP009273 | 2,336,785 | 0 | A | C | 52.9% | 9.6 / 17.9 | 17 | G288G (GGT→GGG) | yfaL | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| * | NZ_CP009273 | 3,254,411 | 0 | T | C | 52.0% | 19.4 / 33.6 | 25 | D456G (GAC→GGC) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase |
| * | NZ_CP009273 | 3,254,414 | 0 | A | C | 52.0% | 12.0 / 31.9 | 25 | V455G (GTG→GGG) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase |