mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,738,694 | 0 | T | C | 61.1% | ‑5.9 / 11.5 | 18 | P177P (CCT→CCC) | yiaN | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| * | NZ_CP009273 | 3,774,215 | 0 | T | G | 60.0% | 6.5 / 11.5 | 15 | G343G (GGT→GGG) | lldD | quinone‑dependent L‑lactate dehydrogenase |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 58.8% | ‑3.4 / 15.4 | 17 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 653,356 | 0 | A | C | 58.3% | 11.0 / 12.7 | 12 | G13G (GGT→GGG) | crcB | fluoride efflux transporter CrcB |
| * | NZ_CP009273 | 1,853,926 | 0 | A | G | 58.3% | 3.8 / 11.5 | 13 | P187P (CCT→CCC) | ydjK | MFS transporter |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 57.9% | 18.3 / 23.3 | 20 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 700,026 | 0 | T | G | 57.1% | 9.6 / 13.9 | 15 | G209G (GGT→GGG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 2,367,400 | 0 | A | C | 57.1% | 12.8 / 24.1 | 21 | G361G (GGT→GGG) | menE | o‑succinylbenzoate‑‑CoA ligase |
| * | NZ_CP009273 | 3,909,226 | 0 | T | G | 55.6% | 16.0 / 20.4 | 18 | Y36S (TAC→TCC) | atpC | F0F1 ATP synthase subunit epsilon |
| * | NZ_CP009273 | 4,475,282 | 0 | T | G | 55.0% | 12.7 / 19.1 | 20 | T163P (ACC→CCC) | pepA | leucyl aminopeptidase |
| * | NZ_CP009273 | 1,024,783 | 0 | T | G | 54.5% | 8.0 / 12.7 | 11 | T215P (ACC→CCC) | rlmI | 23S rRNA (cytosine(1962)‑C(5))‑methyltransferase RlmI |
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 54.5% | 7.4 / 13.0 | 11 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 53.3% | 7.4 / 16.8 | 15 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 1,872,539 | 0 | G | T | 53.3% | 11.2 / 22.4 | 15 | E190* (GAA→TAA) | dgcP | diguanylate cyclase DgcP |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 53.3% | 5.9 / 16.2 | 15 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 2,832,718 | 0 | T | G | 53.3% | 8.6 / 11.7 | 15 | intergenic (‑95/‑165) | ascG/ascF | DNA‑binding transcriptional regulator AscG/PTS cellobiose/arbutin/salicin transporter subunit IIBC |
| * | NZ_CP009273 | 3,168,589 | 0 | T | C | 53.3% | 14.9 / 18.7 | 15 | D56G (GAC→GGC) | parE | DNA topoisomerase IV subunit B |
| * | NZ_CP009273 | 3,588,404 | 0 | T | A | 53.3% | 4.0 / 16.3 | 15 | Y146F (TAC→TTC) | livM | branched chain amino acid ABC transporter permease LivM |
| * | NZ_CP009273 | 16,734 | 0 | A | C | 52.9% | 19.6 / 25.0 | 17 | intergenic (+177/+17) | BW25113_RS00080/mokC | IS4‑like element IS421 family transposase/type I toxin‑antitoxin system toxin MokC |
| * | NZ_CP009273 | 349,993 | 0 | T | G | 51.4% | 37.2 / 49.5 | 35 | V526G (GTT→GGT) | prpE | propionate‑‑CoA ligase |