mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 59 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 822,955 | 0 | T | G | 68.8% | 0.3 / 11.5 | 16 | T495P (ACC→CCC) | ybhF | ATP‑binding cassette domain‑containing protein |
| * | NZ_CP009273 | 4,594,161 | 0 | C | T | 67.7% | ‑1.6 / 27.6 | 31 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 64.5% | ‑3.4 / 29.3 | 31 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 1,782,801 | 0 | A | C | 57.9% | 20.2 / 23.4 | 19 | D37A (GAC→GCC) | aroH | 3‑deoxy‑7‑phosphoheptulonate synthase AroH |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 57.1% | 19.2 / 24.5 | 21 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 1,125,825 | 0 | T | C | 55.6% | 13.7 / 20.2 | 18 | G165G (GGA→GGG) | flgA | flagellar basal body P‑ring formation chaperone FlgA |
| * | NZ_CP009273 | 1,782,797 | 0 | A | C | 55.0% | 21.6 / 27.2 | 20 | T36P (ACC→CCC) | aroH | 3‑deoxy‑7‑phosphoheptulonate synthase AroH |
| * | NZ_CP009273 | 700,026 | 0 | T | G | 54.5% | 16.1 / 24.3 | 22 | G209G (GGT→GGG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 892,805 | 0 | T | G | 54.5% | 11.1 / 12.9 | 11 | V89G (GTG→GGG) | potI | putrescine ABC transporter permease PotI |
| * | NZ_CP009273 | 1,571,380 | 0 | A | C | 54.5% | 35.6 / 59.9 | 44 | V166G (GTA→GGA) | yddB | TonB‑dependent receptor plug domain‑containing protein |
| * | NZ_CP009273 | 497,020 | 0 | A | C | 53.8% | 8.2 / 16.3 | 13 | *559E (TAA→GAA) | ybaL | Kef family K(+) transporter |
| * | NZ_CP009273 | 997,447 | 0 | T | G | 53.8% | 23.6 / 35.0 | 26 | V62G (GTA→GGA) | elfG | fimbrial protein |
| * | NZ_CP009273 | 2,738,448 | 0 | A | C | 53.3% | 23.0 / 41.2 | 30 | V84G (GTG→GGG) | trmD | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| * | NZ_CP009273 | 2,840,799 | 0 | A | C | 53.3% | 15.5 / 18.4 | 15 | V601G (GTG→GGG) | hycC | formate hydrogenlyase subunit 3 |
| * | NZ_CP009273 | 700,031 | 0 | T | G | 52.9% | 11.1 / 14.6 | 17 | V211G (GTT→GGT) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| * | NZ_CP009273 | 1,329,948 | 0 | T | G | 52.2% | 19.9 / 25.4 | 23 | intergenic (+24/‑140) | BW25113_RS25560/acnA | hypothetical protein/aconitate hydratase AcnA |
| * | NZ_CP009273 | 71,561 | 0 | T | G | 52.0% | 31.6 / 39.2 | 25 | N136T (AAC→ACC) | thiB | thiamine ABC transporter substrate binding subunit |
| * | NZ_CP009273 | 71,566 | 0 | C | T | 52.0% | 6.7 / 34.0 | 25 | L134L (CTG→CTA) | thiB | thiamine ABC transporter substrate binding subunit |
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 50.0% | 26.7 / 22.1 | 30 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 687,303 | 0 | A | G | 47.1% | 30.2 / 10.7 | 34 | intergenic (‑63/+27) | corC/ybeY | CNNM family magnesium/cobalt transport protein CorC/rRNA maturation RNase YbeY |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 734428 | 23 (0.710) | 3 (0.100) | 3/158 | 2.5 | 12.7% | intergenic (+122/‑29) | ybfD/ybgA | ISAs1 family transposase/YbgA family protein |
| ? | NZ_CP009273 | 734433 = | 19 (0.610) | intergenic (+127/‑24) | ybfD/ybgA | ISAs1 family transposase/YbgA family protein | |||||