mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 1,060,988 | (A)6→5 | intergenic (+240/‑53) | yccE → / → agp | YccE family protein/bifunctional glucose‑1‑phosphatase/inositol phosphatase |
| RA | 1,531,275 | G→A | L98L (CTG→TTG) | narW ← | nitrate reductase molybdenum cofactor assembly chaperone |
| RA | 1,568,198 | A→G | F417S (TTC→TCC) | pqqL ← | insulinase family protein |
| RA | 1,659,576 | T→C | F14S (TTC→TCC) | clcB → | voltage‑gated ClC‑type chloride channel ClcB |
| RA | 1,782,276 | T→G | V192G (GTG→GGG) | ppsR → | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR |
| RA | 2,380,341 | G→A | intergenic (+31/‑72) | yfbL → / → yfbM | M28 family metallopeptidase/YfbM family protein |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,798,416 | (T)8→7 | coding (61/936 nt) | rfaS ← | LPS core biosynthesis protein RfaS |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 356981 | 357570 | 590 | 7 [0] | [3] 6 | lacA | galactoside O‑acetyltransferase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 51 (1.440) | 29/168 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 12 (0.340) | 14 (0.490) | 11/136 | 0.9 | 62.6% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 7 (0.240) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1203261 | 12 (0.340) | 8 (0.280) | 7/136 | 1.5 | 48.9% | coding (305/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | = 1205058 | 7 (0.240) | coding (57/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 17 (0.490) | 10/166 | 1.3 | 94.5% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 1 (0.030) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 45 (1.270) | 28/168 | 0.1 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2283592 | NA (NA) | intergenic (‑68/‑387) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP | |||||
| * | ? | NZ_CP009273 | 3615349 = | NA (NA) | 3 (0.090) | 3/152 | 2.8 | 100% | coding (2798/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NZ_CP009273 | 3615372 = | 0 (0.000) | coding (2821/4236 nt) | rhsB | rhs element protein RhsB | |||||