mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 32 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,659,062 | 0 | C | A | 65.2% | 5.3 / 14.7 | 23 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 765,675 | 0 | A | C | 58.8% | 14.4 / 17.6 | 17 | T748P (ACC→CCC) | mngB | mannosylglycerate hydrolase |
| * | NZ_CP009273 | 3,659,058 | 0 | T | C | 58.3% | 5.4 / 17.9 | 24 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 360,129 | 0 | T | G | 57.1% | 7.4 / 10.8 | 14 | intergenic (‑60/+226) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| * | NZ_CP009273 | 4,049,475 | 0 | A | C | 56.2% | 8.4 / 13.9 | 16 | G75G (GGT→GGG) | glnL | nitrogen regulation protein NR(II) |
| * | NZ_CP009273 | 2,955,854 | 0 | T | G | 55.6% | 11.3 / 15.9 | 18 | S90S (TCA→TCC) | ppdC | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein |
| * | NZ_CP009273 | 1,385,348 | 0 | T | C | 54.5% | 3.0 / 11.5 | 11 | S255G (AGC→GGC) | ycjY | alpha/beta hydrolase |
| * | NZ_CP009273 | 2,370,639 | 0 | C | A | 54.5% | 6.2 / 13.9 | 11 | A145S (GCC→TCC) | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| * | NZ_CP009273 | 3,659,046 | 0 | A | T | 54.5% | 5.4 / 25.3 | 22 | I42N (ATT→AAT) | gadX | acid resistance transcriptional activator GadX |
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 54.5% | 6.5 / 12.3 | 11 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| * | NZ_CP009273 | 754,027 | 0 | T | A | 53.8% | 3.8 / 16.7 | 13 | intergenic (+166/‑135) | sdhB/sucA | succinate dehydrogenase iron‑sulfur subunit SdhB/2‑oxoglutarate dehydrogenase E1 component |
| * | NZ_CP009273 | 1,906,007 | 0 | T | G | 53.8% | 6.5 / 11.2 | 13 | H276P (CAC→CCC) | htpX | protease HtpX |
| * | NZ_CP009273 | 2,221,751 | 0 | A | C | 53.8% | 4.6 / 11.4 | 13 | pseudogene (487/1436 nt) | mdtQ | multidrug resistance outer membrane protein MdtQ |
| * | NZ_CP009273 | 3,012,931 | 0 | A | C | 53.8% | 0.7 / 12.4 | 13 | T138P (ACA→CCA) | ssnA | putative aminohydrolase SsnA |
| * | NZ_CP009273 | 4,213,521 | 0 | T | G | 53.8% | 8.7 / 12.5 | 13 | K12N (AAA→AAC) | iclR | glyoxylate bypass operon transcriptional repressor IclR |
| * | NZ_CP009273 | 4,558,321 | 0 | T | G | 53.8% | 30.8 / 35.7 | 26 | T6P (ACC→CCC) | mdtM | multidrug efflux MFS transporter MdtM |
| * | NZ_CP009273 | 2,786,319 | 0 | A | C | 53.3% | 9.2 / 14.8 | 15 | T76P (ACC→CCC) | gabT | 4‑aminobutyrate‑‑2‑oxoglutarate transaminase |
| * | NZ_CP009273 | 3,387,034 | 0 | T | G | 53.3% | 11.8 / 16.4 | 15 | T862P (ACG→CCG) | yhdP | AsmA2 domain‑containing protein YhdP |
| * | NZ_CP009273 | 297,088 | 0 | A | C | 52.9% | 17.2 / 22.0 | 18 | L171V (TTG→GTG) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| * | NZ_CP009273 | 2,033,556 | 0 | C | G | 52.9% | 13.0 / 24.6 | 17 | L200V (CTG→GTG) | msrP | protein‑methionine‑sulfoxide reductase catalytic subunit MsrP |