mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 26 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP025533 | 2,084,510 | 0 | T | A | 48.2% | 28.8 / inf | 251 | intergenic (‑12/+189) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,084,508 | 0 | G | T | 48.0% | 57.4 / inf | 252 | intergenic (‑10/+191) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,084,509 | 0 | G | T | 48.0% | 65.4 / inf | 252 | intergenic (‑11/+190) | dapA/CYL77_09945 | 4‑hydroxy‑tetrahydrodipicolinate synthase/thymidylate synthase (FAD) |
| * | CP025533 | 2,420,708 | 0 | T | C | 45.9% | 284.0 / inf | 231 | P455P (CCT→CCC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,717 | 0 | A | C | 45.8% | 331.2 / inf | 236 | G458G (GGA→GGC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,723 | 0 | G | A | 45.6% | 285.3 / inf | 230 | V460V (GTG→GTA) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,710 | 0 | C | T | 45.5% | 283.7 / inf | 233 | A456V (GCT→GTT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,726 | 0 | G | T | 45.2% | 334.6 / inf | 230 | G461G (GGG→GGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,733 | 0 | C | T | 44.9% | 293.7 / inf | 225 | P464S (CCA→TCA) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,737 | 0 | T | C | 43.4% | 306.4 / 315.3 | 219 | V465A (GTG→GCG) ‡ | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,738 | 0 | G | A | 43.4% | 314.5 / inf | 219 | V465V (GTG→GTA) ‡ | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,739 | 0 | G | A | 43.4% | 316.2 / inf | 219 | G466S (GGT→AGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,086,244 | 0 | T | G | 42.6% | 149.5 / inf | 256 | G2G (GGA→GGC) | CYL77_09950 | 4‑hydroxy‑tetrahydrodipicolinate reductase |
| * | CP025533 | 2,420,781 | 0 | A | C | 36.4% | 437.5 / 311.4 | 209 | S480R (AGT→CGT) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 985,647 | 0 | A | C | 36.0% | 274.7 / 239.7 | 164 | P272P (CCA→CCC) | CYL77_04730 | HNH endonuclease |
| * | CP025533 | 2,420,810 | 0 | A | G | 35.4% | 407.9 / 237.9 | 206 | K489K (AAA→AAG) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,786 | 0 | G | C | 35.3% | 474.5 / 277.4 | 207 | S481S (TCG→TCC) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 2,420,828 | 0 | C | G | 34.9% | 483.7 / 287.0 | 210 | P495P (CCC→CCG) | CYL77_11475 | HNH endonuclease |
| * | CP025533 | 985,671 | 0 | A | C | 32.9% | 320.6 / 218.1 | 167 | R280R (CGA→CGC) | CYL77_04730 | HNH endonuclease |
| * | CP025533 | 1,177,120 | 0 | T | G | 30.2% | 246.8 / 18.4 | 107 | N259T (AAC→ACC) | kgd | 2‑oxoglutarate dehydrogenase E1/E2 component |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP025533 | = 497710 | 105 (0.830) | 6 (0.070) | 6/346 | 15.8 | 7.2% | intergenic (+2/‑251) | CYL77_02460/CYL77_02465 | tRNA‑Thr/tRNA‑Thr |
| ? | CP025533 | 498036 = | 82 (0.930) | intergenic (+3/‑36) | CYL77_02465/CYL77_02470 | tRNA‑Thr/tRNA‑Met | |||||