mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BA000036 | 414,931 | 0 | C | A | 40.0% | ‑1.0 / 18.8 | 25 | S73Y (TCC→TAC) | Cgl0391 | ABC‑type transporter, ATPase component |
| * | BA000036 | 414,912 | 0 | C | T | 37.5% | 18.3 / 13.0 | 24 | P67S (CCC→TCC) | Cgl0391 | ABC‑type transporter, ATPase component |
| * | BA000036 | 1,994,312 | 0 | G | C | 30.7% | 292.0 / 191.4 | 163 | intergenic (‑191/+293) | Cgl1890/Cgl1891 | Hypothetical protein/Hypothetical protein |
| * | BA000036 | 414,924 | 1 | . | A | 26.1% | 40.3 / 22.3 | 23 | coding (211/816 nt) | Cgl0391 | ABC‑type transporter, ATPase component |
| * | BA000036 | 1,994,392 | 0 | A | G | 25.4% | 259.8 / 86.2 | 128 | intergenic (‑271/+213) | Cgl1890/Cgl1891 | Hypothetical protein/Hypothetical protein |
| * | BA000036 | 414,915 | 0 | G | . | 25.0% | 40.2 / 16.3 | 24 | coding (202/816 nt) | Cgl0391 | ABC‑type transporter, ATPase component |
| * | BA000036 | 1,994,404 | 0 | C | A | 24.2% | 268.8 / 88.4 | 128 | intergenic (‑283/+201) | Cgl1890/Cgl1891 | Hypothetical protein/Hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BA000036 | 1693901 = | 0 (0.000) | 3 (0.040) +47 bp |
3/500 | 13.5 | 7.5% | coding (18/660 nt) | Cgl1598 | Pentose‑5‑phosphate‑3‑epimerase |
| ? | BA000036 | 2509508 = | 88 (0.950) | coding (586/612 nt) | Cgl2366 | Pirin‑related protein | |||||