mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 274,977 | T→C | I204I (ATT→ATC) | Cgl0255 → | Catalase |
| MC JC | 335,027 | 1067 bp→22 bp | coding (19‑1085/1107 nt) | Cgl0319 → | Zn‑dependent alcohol dehydrogenases, class III |
| RA | 364,912 | A→C | E363D (GAA→GAC) | Cgl0344 → | ATPases involved in chromosome partitioning |
| RA | 387,460 | T→C | *66* (TAA→TAG) | Cgl0365 ← | Hypothetical protein |
| RA | 671,707 | Δ1 bp | coding (8/957 nt) | Cgl0657 → | Uncharacterized protein involved in propionate catabolism |
| RA | 736,480 | T→C | V23A (GTG→GCG) | Cgl0716 → | Hypothetical protein |
| RA | 770,809 | G→A | L1112F (CTT→TTT) | Cgl0738 ← | Type II restriction enzyme, methylase subunits |
| RA | 1,142,255 | T→C | L328S (TTG→TCG) | Cgl1095 → | Hypothetical membrane protein |
| RA | 1,279,070 | T→G | D461E (GAT→GAG) | Cgl1212 → | F0F1‑type ATP synthase beta subunit |
| RA | 1,457,949 | C→T | T301T (ACC→ACT) | Cgl1389 → | Phenylalanyl‑tRNA synthetase alpha subunit |
| RA | 1,699,535 | C→T | S288N (AGC→AAC) | Cgl1603 ← | S‑adenosylmethionine synthetase |
| RA | 1,751,737 | G→A | V81I (GTC→ATC) | Cgl1651 → | Hypothetical protein |
| RA | 1,810,032 | G→A | R91H (CGC→CAC) | Cgl1713 → | Site‑specific recombinases, DNA invertase Pin homologs |
| RA | 2,003,379 | C→T | intergenic (+42/+20) | Cgl1901 → / ← Cgl1902 | Ribonuclease D/Deoxyxylulose‑5‑phosphate synthase |
| RA | 2,036,724 | A→C | intergenic (‑315/‑88) | Cgl1929 ← / → Cgl1930 | Hypothetical protein/SOS‑response transcriptional repressors (RecA‑mediated autopeptidases) |
| RA | 2,041,951 | G→T | G75V (GGT→GTT) | Cgl1934 → | Transcriptional regulators of sugar metabolism |
| RA | 2,058,943 | A→G | S160P (TCT→CCT) | Cgl1949 ← | 2‑methylthioadenine synthetase |
| RA | 2,060,507 | C→T | intergenic (+5/‑113) | Cgl1950 → / → Cgl1951 | ABC‑type transporter, ATPase component (glutamate)/ABC‑type transporter, periplasmic component (glutamate) |
| RA | 2,060,571 | C→A | intergenic (+69/‑49) | Cgl1950 → / → Cgl1951 | ABC‑type transporter, ATPase component (glutamate)/ABC‑type transporter, periplasmic component (glutamate) |
| RA | 2,083,859 | T→A | G444G (GGA→GGT) | Cgl1975 ← | Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
| RA | 2,126,262 | G→C | D67H (GAC→CAC) | Cgl2012 → | ABC‑type transporter, ATPase component |
| RA | 2,160,737 | C→T | P23L (CCT→CTT) | Cgl2047 → | Hypothetical protein |
| RA | 2,425,773 | G→A | F61F (TTC→TTT) | Cgl2292 ← | Coproporphyrinogen III oxidase and related FeS oxidoreductases |
| RA | 2,979,996 | C→T | H338H (CAC→CAT) | Cgl2795 → | Hypothetical protein |
| MC JC | 2,980,216 | 1466 bp→22 bp | coding (19‑1484/1521 nt) | Cgl2796 ← | NAD‑dependent aldehyde dehydrogenases |
| RA | 2,981,696 | T→A | T2S (ACT→TCT) | Cgl2796 ← | NAD‑dependent aldehyde dehydrogenases |
| JC | 2,990,100 | Δ15 bp | coding (3174‑3188/3336 nt) | Cgl2804 ← | Hypothetical protein |
| RA | 3,035,143 | G→A | R321K (AGG→AAG) | Cgl2846 → | Hypothetical membrane protein |
| RA | 3,126,458 | T→C | A22A (GCT→GCC) | Cgl2927 → | Superoxide dismutase |
| RA | 3,155,328 | T→C | Q457Q (CAA→CAG) | Cgl2951 ← | Predicted transposase |
| RA | 3,156,189 | T→G | V170V (GTA→GTC) | Cgl2951 ← | Predicted transposase |
| RA | 3,189,874 | C→T | intergenic (‑221/‑4) | Cgl2987 ← / → Cgl2988 | Hypothetical protein/Transcriptional regulators |
| RA | 3,208,522 | +T | coding (243/1179 nt) | Cgl3007 → | Malic enzyme |
| RA | 3,286,754 | G→A | E44E (GAG→GAA) | Cgl3077 → | Hypothetical membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BA000036 | 1693265 | 1693900 | 636 | 103 [0] | [0] 75 | Cgl1598 | Pentose‑5‑phosphate‑3‑epimerase |
| * | * | ÷ | BA000036 | 1961663–1962273 | 1962935 | 663–1273 | 48 [46] | [46] 48 | Cgl1848 | Hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BA000036 | 1114357 = | NA (NA) | 76 (0.820) | 68/594 | 0.5 | 95.0% | intergenic (+35/‑129) | Cgl1065/Cgl1066 | Permeases of the major facilitator superfamily/Transposase |
| ? | BA000036 | = 1413173 | 4 (0.040) | intergenic (‑257/+392) | Cgl1352/codon recognized:TTG | Hypothetical membrane protein/tRNA‑Leu | |||||
| * | ? | BA000036 | 1114358 = | NA (NA) | 100 (1.090) | 84/592 | 0.1 | 100% | intergenic (+36/‑128) | Cgl1065/Cgl1066 | Permeases of the major facilitator superfamily/Transposase |
| ? | BA000036 | = 1693264 | 0 (0.000) | coding (655/660 nt) | Cgl1598 | Pentose‑5‑phosphate‑3‑epimerase | |||||
| * | ? | BA000036 | = 1115809 | NA (NA) | 102 (1.110) | 92/594 | 0.0 | 98.1% | intergenic (+13/+20) | Cgl1066/Cgl1067 | Transposase/Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
| ? | BA000036 | 1413166 = | 2 (0.020) | intergenic (‑250/+399) | Cgl1352/codon recognized:TTG | Hypothetical membrane protein/tRNA‑Leu | |||||
| * | ? | BA000036 | = 1115810 | NA (NA) | 56 (0.720) +46 bp |
50/502 | 0.9 | 100% | intergenic (+14/+19) | Cgl1066/Cgl1067 | Transposase/Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
| ? | BA000036 | 1693901 = | 0 (0.000) | coding (18/660 nt) | Cgl1598 | Pentose‑5‑phosphate‑3‑epimerase | |||||
| * | ? | BA000036 | 1825711 = | 103 (1.120) | 77 (0.840) | 66/594 | 0.5 | 59.7% | intergenic (‑105/+37) | Cgl1731/Cgl1733 | Hypothetical protein/Putative transposase |
| ? | BA000036 | 1828006 = | 1 (0.010) | intergenic (‑1069/+1679) | Cgl1734/Cgl1735 | Transposase/Hypothetical protein | |||||
| * | ? | BA000036 | = 1827003 | 79 (0.860) | 91 (0.990) | 72/594 | 0.3 | 68.9% | intergenic (‑66/+2682) | Cgl1734/Cgl1735 | Transposase/Hypothetical protein |
| ? | BA000036 | = 1828008 | 3 (0.030) | intergenic (‑1071/+1677) | Cgl1734/Cgl1735 | Transposase/Hypothetical protein | |||||