mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 53 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,981,253 | 0 | C | T | 46.7% | ‑6.0 / 18.4 | 15 | noncoding (1267/1550 nt) | EO946_RS15435 | 16S ribosomal RNA |
| * | NZ_CP034943 | 3,285,580 | 0 | A | G | 42.8% | 285.1 / inf | 382 | I274T (ATA→ACA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,647 | 0 | C | A | 42.4% | 301.9 / inf | 434 | V252L (GTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 2,991,236 | 0 | C | G | 40.0% | 218.4 / 83.8 | 181 | intergenic (+37/‑170) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 3,285,575 | 0 | T | G | 37.9% | 389.4 / inf | 377 | N276H (AAT→CAT) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 3,285,567 | 0 | C | T | 37.7% | 366.1 / inf | 371 | L278L (CTG→CTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 634,054 | 0 | C | G | 33.7% | 271.7 / 49.8 | 174 | E573Q (GAA→CAA) | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 3,285,713 | 0 | G | A | 30.1% | 381.4 / 200.7 | 221 | L230L (CTA→TTA) | EO946_RS16995 | IS3 family transposase |
| * | NZ_CP034943 | 1,730,096 | 0 | G | C | 30.1% | 207.3 / 30.3 | 137 | E173Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 2,270,064 | 0 | G | C | 29.5% | 296.3 / 39.9 | 186 | L39V (CTA→GTA) | prsW | glutamic‑type intramembrane protease PrsW |
| * | NZ_CP034943 | 2,830,523 | 0 | C | G | 27.9% | 371.9 / 43.0 | 210 | L89V (CTT→GTT) | brnQ | branched‑chain amino acid transport system II carrier protein |
| * | NZ_CP034943 | 2,991,227 | 0 | T | G | 27.8% | 268.4 / 49.5 | 187 | intergenic (+28/‑179) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 2,991,252 | 0 | C | A | 27.5% | 297.6 / 18.3 | 174 | intergenic (+53/‑154) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 3,219,797 | 0 | G | T | 27.0% | 269.2 / 34.7 | 166 | V379L (GTA→TTA) | oxdC | oxalate decarboxylase |
| * | NZ_CP034943 | 2,270,052 | 0 | G | C | 26.7% | 364.4 / 36.1 | 201 | L43V (CTT→GTT) | prsW | glutamic‑type intramembrane protease PrsW |
| * | NZ_CP034943 | 634,058 | 0 | C | G | 26.5% | 287.8 / 29.5 | 174 | K571N (AAG→AAC) | EO946_RS03330 | ABC‑F family ATP‑binding cassette domain‑containing protein |
| * | NZ_CP034943 | 2,991,245 | 0 | G | T | 25.8% | 286.3 / 38.2 | 182 | intergenic (+46/‑161) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| * | NZ_CP034943 | 595,203 | 0 | C | A | 25.8% | 369.7 / 49.0 | 199 | T30K (ACG→AAG) | EO946_RS03130 | MMPL family transporter |
| * | NZ_CP034943 | 1,730,075 | 0 | G | C | 25.7% | 278.1 / 22.3 | 147 | E166Q (GAA→CAA) | rodZ | cell shape determination protein RodZ |
| * | NZ_CP034943 | 3,446,970 | 0 | G | T | 25.5% | 396.1 / 69.7 | 239 | Q206K (CAA→AAA) | degU | two‑component system response regulator DegU |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 607243 | 373 (1.480) | 27 (0.110) | 14/254 | 6.5 | 8.5% | coding (86/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607703 = | 231 (0.980) | coding (546/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607243 | 373 (1.480) | 15 (0.060) | 8/254 | 8.6 | 5.2% | coding (86/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607631 = | 195 (0.820) | coding (474/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607225 | 416 (1.650) | 16 (0.060) | 8/266 | 8.9 | 4.6% | coding (68/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607442 = | 255 (1.030) | coding (285/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607443 = | 270 (1.070) | 11 (0.050) +AGTAGCCCCTGTGGCTCCC |
6/232 | 9.0 | 3.9% | coding (286/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607837 | 367 (1.460) | coding (680/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607243 | 377 (1.500) | 23 (0.100) +CGGACCAG |
7/254 | 9.1 | 7.7% | coding (86/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607675 = | 208 (0.830) | coding (518/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 607695 = | 230 (0.910) | 10 (0.040) +AGTAGCCCCT |
6/250 | 9.5 | 3.6% | coding (538/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607846 | 342 (1.360) | coding (689/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607429 | 256 (1.020) | 4 (0.020) | 4/216 | 9.7 | 2.1% | coding (272/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607691 = | 167 (0.830) | coding (534/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | = 607682 | 222 (0.900) | 8 (0.030) +ACGGGAGCC |
5/248 | 10.0 | 3.7% | coding (525/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607683 = | 224 (0.890) | coding (526/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||
| * | ? | NZ_CP034943 | 767776 = | 291 (1.160) | 4 (0.020) | 3/244 | 11.2 | 1.5% | coding (189/645 nt) | EO946_RS03930 | hypothetical protein |
| ? | NZ_CP034943 | = 767772 | 278 (1.220) | coding (193/645 nt) | EO946_RS03930 | hypothetical protein | |||||
| * | ? | NZ_CP034943 | = 607646 | 214 (0.860) | 3 (0.010) +ACGGGAGCC |
3/248 | 11.3 | 1.4% | coding (489/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | 607683 = | 227 (0.900) | coding (526/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||