mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 41.2% | 123.9 / 207.1 | 161 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 2,947,467 | 0 | A | C | 23.8% | 93.8 / 18.6 | 42 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 422,429 | 0 | T | G | 23.8% | 251.3 / 14.7 | 122 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| * | U00096 | 2,947,465 | 0 | T | . | 23.4% | 124.9 / 35.2 | 47 | intergenic (+2/‑32) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 1,708,751 | 0 | A | G | 22.5% | 62.8 / 14.5 | 40 | E611E (GAA→GAG) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 3,269,956 | 0 | T | C | 21.2% | 168.0 / 43.7 | 94 | intergenic (+354/+260) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| Marginal new junction evidence (lowest skew 10 of 20 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 4542682 = | 254 (1.440) | 21 (0.130) | 16/274 | 12.4 | 7.7% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 265 (1.600) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 4542690 | 256 (1.450) | 15 (0.090) | 15/274 | 12.8 | 5.6% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 265 (1.600) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 781369 = | 95 (0.540) | 43 (0.250) +G |
13/290 | 14.1 | 37.5% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 49 (0.280) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 696863 = | 42 (0.240) | 33 (0.200) +GAAGAAACAATC |
10/268 | 14.7 | 24.5% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 180 (1.020) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | 781577 = | 114 (0.650) | 77 (0.440) +G |
11/290 | 15.0 | 48.8% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 49 (0.280) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 780554 = | 186 (1.050) | 40 (0.230) +G |
11/290 | 15.0 | 25.5% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | U00096 | = 2521129 | 49 (0.280) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 1287084 | 46 (0.260) | 16 (0.100) | 3/252 | 18.6 | 16.1% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 127 (0.830) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | = 1287084 | 46 (0.260) | 10 (0.070) | 3/254 | 18.7 | 9.3% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | = 4175537 | 154 (1.000) | noncoding (66/85 nt) | tyrU | tRNA‑Tyr | |||||
| * | ? | U00096 | = 1618836 | 0 (0.000) | 4 (0.020) +AGTTGTT |
3/262 | 18.9 | 100% | coding (73/666 nt) | marC | inner membrane protein MarC |
| ? | U00096 | 1618837 = | 0 (0.000) | coding (72/666 nt) | marC | inner membrane protein MarC | |||||
| * | ? | U00096 | = 3985964 | 240 (1.360) | 3 (0.020) | 3/286 | 19.7 | 1.3% | coding (44/1656 nt) | aslA | putative sulfatase AslA |
| ? | U00096 | 4083998 = | 208 (1.200) | coding (1825/3051 nt) | fdoG | formate dehydrogenase O subunit alpha | |||||