mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 38.8% | 154.4 / 216.1 | 181 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 1,708,901 | 0 | A | C | 28.6% | 82.4 / 10.6 | 67 | R661R (CGA→CGC) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 2,947,467 | 0 | A | C | 27.7% | 135.5 / 48.2 | 65 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 2,947,465 | 0 | T | . | 24.3% | 209.0 / 62.6 | 75 | intergenic (+2/‑32) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 1,552,191 | 0 | C | A | 21.2% | 348.4 / 16.0 | 146 | intergenic (+200/+207) | fdnI/yddM | formate dehydrogenase N subunit gamma/DNA‑binding transcriptional regulator YddM |
| * | U00096 | 2,947,591 | 0 | A | . | 21.1% | 153.9 / 36.8 | 52 | intergenic (+18/‑16) | metW/metV | tRNA‑Met/tRNA‑Met |
| * | U00096 | 422,429 | 0 | T | G | 21.1% | 347.4 / 20.9 | 148 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 4542682 = | 311 (1.370) | 33 (0.160) | 31/274 | 14.0 | 10.0% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 304 (1.430) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 4542690 | 310 (1.370) | 33 (0.160) | 30/274 | 14.3 | 10.0% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 302 (1.420) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | 696863 = | 59 (0.260) | 67 (0.320) +GAAGAAACAATC |
21/268 | 17.4 | 36.0% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 200 (0.880) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | 781369 = | 140 (0.620) | 75 (0.330) +G |
10/290 | 24.1 | 42.4% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 65 (0.290) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 781577 = | 129 (0.570) | 111 (0.490) +G |
9/290 | 24.7 | 53.5% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 65 (0.290) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 780554 = | 248 (1.100) | 72 (0.320) +G |
9/290 | 24.7 | 31.7% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | U00096 | = 2521129 | 65 (0.290) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | = 1287262 | 105 (0.460) | 6 (0.030) | 6/250 | 24.8 | 6.2% | noncoding (67/85 nt) | tyrV | tRNA‑Tyr |
| ? | U00096 | 1287382 = | 91 (0.470) | intergenic (‑54/+156) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr | |||||
| * | ? | U00096 | = 2560972 | 91 (0.400) | 5 (0.030) | 5/252 | 25.7 | 5.6% | intergenic (+74/‑396) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM |
| ? | U00096 | 2561043 = | 89 (0.460) | intergenic (+145/‑325) | yffL/yffM | uncharacterized protein YffL/uncharacterized protein YffM | |||||
| * | ? | U00096 | = 696830 | 57 (0.250) | 8 (0.040) +23 bp |
4/246 | 26.3 | 6.5% | noncoding (1/75 nt) | glnW | tRNA‑Gln |
| ? | U00096 | = 2795920 | 217 (0.960) | coding (247/663 nt) | glaR | DNA‑binding transcriptional repressor GlaR | |||||
| * | ? | U00096 | = 441942 | 228 (1.010) | 3 (0.010) | 3/288 | 29.4 | 1.2% | coding (394/1449 nt) | thiI | tRNA uridine 4‑sulfurtransferase |
| ? | U00096 | = 3389155 | 281 (1.260) | coding (183/204 nt) | aaeX | DUF1656 domain‑containing protein AaeX | |||||