mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | U00096 | 4,296,060 | 0 | C | T | 36.2% | 190.9 / 203.3 | 187 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | U00096 | 1,708,751 | 0 | A | G | 30.2% | 64.4 / 32.5 | 55 | E611E (GAA→GAG) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 422,429 | 0 | T | G | 24.7% | 329.0 / 25.1 | 151 | intergenic (+70/‑89) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| * | U00096 | 1,708,930 | 0 | C | A | 23.2% | 175.9 / 20.8 | 82 | P671Q (CCG→CAG) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| * | U00096 | 2,947,467 | 0 | A | C | 21.3% | 121.5 / 25.8 | 47 | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| * | U00096 | 1,286,965 | 0 | A | G | 20.9% | 132.0 / 21.8 | 80 | D86G (GAC→GGC) | ychS | putative uncharacterized protein YchS |
| * | U00096 | 422,432 | 0 | T | G | 20.7% | 392.4 / 15.2 | 151 | intergenic (+73/‑86) | proY/malZ | putative transporter ProY/maltodextrin glucosidase |
| * | U00096 | 4,338,130 | 0 | G | C | 20.6% | 550.0 / 65.1 | 228 | intergenic (‑201/+124) | adiY/adiA | DNA‑binding transcriptional activator AdiY/arginine decarboxylase, degradative |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | U00096 | 696863 = | 73 (0.330) | 46 (0.220) +GAAGAAACAATC |
22/268 | 17.8 | 26.4% | intergenic (‑33/+2) | glnW/glnU | tRNA‑Gln/tRNA‑Gln |
| ? | U00096 | = 697134 | 207 (0.930) | intergenic (‑1/+379) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | U00096 | = 1287084 | 60 (0.270) | 33 (0.170) | 15/252 | 20.2 | 23.4% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | 1287557 = | 164 (0.850) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | U00096 | 4542682 = | 298 (1.330) | 15 (0.070) | 14/274 | 22.0 | 5.1% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | 4542996 = | 277 (1.320) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 2357873 | 180 (0.810) | 23 (0.100) | 15/292 | 22.4 | 11.0% | intergenic (+70/+169) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| ? | U00096 | 2357886 = | 191 (0.850) | intergenic (+83/+156) | rpnE/yfaU | inactive recombination‑promoting nuclease‑like protein RpnE/2‑keto‑3‑deoxy‑L‑rhamnonate aldolase | |||||
| * | ? | U00096 | = 4542690 | 297 (1.330) | 12 (0.060) | 11/274 | 23.7 | 4.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | U00096 | = 4542986 | 277 (1.320) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | U00096 | = 1287084 | 60 (0.270) | 15 (0.080) | 8/254 | 24.6 | 9.9% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | U00096 | = 4175537 | 221 (1.140) | noncoding (66/85 nt) | tyrU | tRNA‑Tyr | |||||
| * | ? | U00096 | 781369 = | 119 (0.530) | 43 (0.190) +G |
11/290 | 24.6 | 33.0% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521128 | 57 (0.250) | intergenic (+2/‑45) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 781577 = | 124 (0.550) | 116 (0.520) +G |
10/290 | 25.2 | 56.8% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 54 (0.240) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 781369 = | 119 (0.530) | 71 (0.320) +G |
10/290 | 25.2 | 45.2% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | U00096 | = 2521129 | 54 (0.240) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | U00096 | 780554 = | 216 (0.970) | 71 (0.320) +G |
10/290 | 25.2 | 34.6% | noncoding (1/76 nt) | lysT | tRNA‑Lys |
| ? | U00096 | = 2521129 | 54 (0.240) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||