mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 34 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP012306 | 1,091,992 | 0 | T | G | 36.4% | 630.9 / 70.5 | 319 | intergenic (+38/‑145) | narI/ychS | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/predicted protein |
| * | AP012306 | 1,421,147 | 0 | T | G | 31.6% | 363.5 / 15.0 | 196 | T79P (ACC→CCC) | ydhB | predicted DNA‑binding transcriptional regulator |
| * | AP012306 | 341,377 | 0 | T | G | 31.6% | 251.5 / 13.6 | 136 | G60G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| * | AP012306 | 644,417 | 0 | G | A | 30.4% | 778.4 / inf | 497 | intergenic (+32/‑401) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| * | AP012306 | 3,527,368 | 0 | A | C | 29.4% | 569.2 / 62.8 | 248 | L140F (TTA→TTC) | rhaS | DNA‑binding transcriptional activator, L‑rhamnose‑binding |
| * | AP012306 | 3,938,887 | 0 | C | T | 28.9% | 461.8 / 147.3 | 235 | S44F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator |
| * | AP012306 | 3,182,861 | 0 | A | C | 28.1% | 293.5 / 26.4 | 128 | L198F (TTA→TTC) | yiaN | predicted transporter |
| * | AP012306 | 1,944,288 | 0 | A | C | 27.2% | 560.9 / 31.2 | 229 | G361G (GGT→GGG) | menE | o‑succinylbenzoate‑CoA ligase |
| * | AP012306 | 2,758,909 | 0 | T | G | 26.8% | 527.9 / 16.8 | 205 | G33G (GGT→GGG) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| * | AP012306 | 800,675 | 0 | A | C | 26.8% | 671.2 / 31.9 | 280 | T192P (ACC→CCC) | lolA | chaperone for lipoproteins |
| * | AP012306 | 2,558,071 | 0 | A | C | 26.3% | 620.8 / 37.2 | 255 | V302G (GTA→GGA) | visC | predicted oxidoreductase, FAD/NAD(P)‑binding domain |
| * | AP012306 | 3,412,049 | 0 | T | G | 26.0% | 816.3 / 39.2 | 339 | intergenic (+25/‑122) | proM/aslB | tRNA‑Pro/predicted regulator of arylsulfatase activity |
| * | AP012306 | 1,226,557 | 0 | A | G | 25.3% | 421.7 / 73.5 | 186 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | AP012306 | 1,128,412 | 0 | T | G | 24.5% | 747.4 / 54.0 | 296 | V29G (GTG→GGG) | yciO | conserved protein |
| * | AP012306 | 1,270,226 | 0 | A | G | 24.3% | 463.6 / 37.6 | 177 | S779P (TCC→CCC) | dos | cAMP phosphodiesterase, heme‑regulated |
| * | AP012306 | 2,384,795 | 0 | T | G | 24.3% | 626.0 / 39.5 | 243 | N387T (AAC→ACC) | cysN | sulfate adenylyltransferase, subunit 1 |
| * | AP012306 | 1,854,851 | 0 | A | C | 24.2% | 633.8 / 64.5 | 253 | T25P (ACC→CCC) | yejH | predicted ATP‑dependet helicase |
| * | AP012306 | 1,393,379 | 0 | A | C | 24.0% | 672.7 / 34.7 | 242 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase |
| * | AP012306 | 3,698,828 | 0 | T | G | 23.8% | 738.3 / 41.4 | 273 | F68V (TTT→GTT) | aphA | acid phosphatase/phosphotransferase, class B, non‑specific |
| * | AP012306 | 406,677 | 0 | A | G | 23.6% | 486.4 / 28.7 | 195 | K294E (AAA→GAA) | hemH | ferrochelatase |
| Marginal new junction evidence (lowest skew 10 of 70 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP012306 | 2073345 = | 401 (1.300) | 17 (0.080) +43 bp |
15/212 | 17.3 | 6.2% | noncoding (1/76 nt) | valU | tRNA‑Val |
| ? | AP012306 | = 2073665 | 328 (1.060) | intergenic (+3/‑2) | valY/lysV | tRNA‑Val/tRNA‑Lys | |||||
| * | ? | AP012306 | 643801 = | 316 (1.030) | 17 (0.080) +43 bp |
15/212 | 17.3 | 6.9% | noncoding (1/76 nt) | valZ | tRNA‑Val |
| ? | AP012306 | = 2073665 | 328 (1.060) | intergenic (+3/‑2) | valY/lysV | tRNA‑Val/tRNA‑Lys | |||||
| * | ? | AP012306 | 643498 = | 330 (1.070) | 17 (0.080) +43 bp |
15/212 | 17.3 | 6.8% | noncoding (1/76 nt) | valT | tRNA‑Val |
| ? | AP012306 | = 2073665 | 328 (1.060) | intergenic (+3/‑2) | valY/lysV | tRNA‑Val/tRNA‑Lys | |||||
| * | ? | AP012306 | 2073460 = | 270 (0.880) | 17 (0.070) +38 bp |
15/222 | 17.9 | 7.1% | intergenic (+40/‑5) | valU/valX | tRNA‑Val/tRNA‑Val |
| ? | AP012306 | = 2073665 | 328 (1.060) | intergenic (+3/‑2) | valY/lysV | tRNA‑Val/tRNA‑Lys | |||||
| * | ? | AP012306 | 2073345 = | 401 (1.300) | 13 (0.060) +46 bp |
13/206 | 17.9 | 5.0% | noncoding (1/76 nt) | valU | tRNA‑Val |
| ? | AP012306 | = 2073420 | 312 (1.010) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | AP012306 | 643801 = | 316 (1.030) | 13 (0.060) +46 bp |
13/206 | 17.9 | 5.7% | noncoding (1/76 nt) | valZ | tRNA‑Val |
| ? | AP012306 | = 2073420 | 312 (1.010) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | AP012306 | 643498 = | 330 (1.070) | 13 (0.060) +46 bp |
13/206 | 17.9 | 5.5% | noncoding (1/76 nt) | valT | tRNA‑Val |
| ? | AP012306 | = 2073420 | 312 (1.010) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | AP012306 | 643498 = | 330 (1.070) | 13 (0.060) +45 bp |
13/208 | 18.1 | 5.4% | noncoding (1/76 nt) | valT | tRNA‑Val |
| ? | AP012306 | = 643574 | 322 (1.050) | intergenic (+1/‑2) | valT/lysW | tRNA‑Val/tRNA‑Lys | |||||
| * | ? | AP012306 | 643801 = | 316 (1.030) | 13 (0.060) +44 bp |
13/210 | 18.2 | 6.3% | noncoding (1/76 nt) | valZ | tRNA‑Val |
| ? | AP012306 | = 643878 | 234 (0.760) | intergenic (+2/‑2) | valZ/lysY | tRNA‑Val/tRNA‑Lys | |||||
| * | ? | AP012306 | 643498 = | 330 (1.070) | 13 (0.060) +44 bp |
13/210 | 18.2 | 6.2% | noncoding (1/76 nt) | valT | tRNA‑Val |
| ? | AP012306 | = 643878 | 234 (0.760) | intergenic (+2/‑2) | valZ/lysY | tRNA‑Val/tRNA‑Lys | |||||