mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3179456 = | NA (NA) | 3 (0.010) | 3/276 | NT | 1.1% | intergenic (+8/‑90) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3763742 | 282 (0.900) | coding (998/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump | |||||
| * | ? | CP009273 | = 2811301 | 259 (0.830) | 7 (0.030) | 7/238 | NT | 3.0% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 225 (0.840) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 9 (0.030) | 3/278 | NT | 2.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 3080037 | 314 (1.010) | intergenic (+276/‑28) | yqgC/metK | uncharacterized protein/S‑adenosylmethionine synthetase | |||||
| * | ? | CP009273 | = 2164909 | NA (NA) | 9 (0.030) | 6/278 | NT | 2.8% | intergenic (+30/+1) | insF1/gatR | IS3 transposase B/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| ? | CP009273 | 3785425 = | 307 (0.980) | coding (487/1197 nt) | kbl | glycine C‑acetyltransferase | |||||
| * | ? | CP009273 | 2163652 = | NA (NA) | 4 (0.010) | 4/278 | NT | 1.3% | intergenic (‑4/‑65) | gatR/insE1 | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/IS3 transposase A |
| ? | CP009273 | = 3785427 | 309 (0.990) | coding (485/1197 nt) | kbl | glycine C‑acetyltransferase | |||||
| * | ? | CP009273 | = 1190836 | 267 (0.860) | 14 (0.040) | 9/278 | NT | 5.0% | coding (258/1251 nt) | icd | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| ? | CP009273 | 1462167 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 1190832 = | 275 (0.880) | 10 (0.030) | 7/278 | NT | 3.5% | coding (254/1251 nt) | icd | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| ? | CP009273 | = 1463497 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 361823 | 290 (0.930) | 8 (0.030) +TTAATTAA |
7/262 | NT | 2.5% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
| ? | CP009273 | 4033991 = | 371 (1.190) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | = 361152 | 5814 (18.630) | 6 (0.020) +CCAT |
6/270 | NT | 0.11% | coding (592/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | 361153 = | 5814 (18.630) | coding (591/1083 nt) | lacI | DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 361149 | 4957 (16.480) | 57 (0.190) +CAGA |
12/260 | NT | 1.1% | coding (595/1083 nt) | lacI | DNA‑binding transcriptional repressor |
| ? | CP009273 | 361150 = | 5519 (17.690) | coding (594/1083 nt) | lacI | DNA‑binding transcriptional repressor | |||||