mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 29 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | ACB122 | 3,210,881 | 0 | T | G | 71.4% | ‑1.1 / 18.6 | 28 | V204G (GTC→GGC) | oprJ_2 | Outer membrane protein OprJ |
| * | ACB122 | 759,433 | 0 | A | C | 57.9% | 3.5 / 15.5 | 21 | intergenic (+42/‑126) | mmuM_1/CJ019_00729 | Homocysteine S‑methyltransferase/L‑methionine gamma‑lyase |
| * | ACB122 | 5,974,062 | 0 | T | G | 57.1% | 1.0 / 12.2 | 28 | L684R (CTG→CGG) | sasA_19 | Adaptive‑response sensory‑kinase SasA |
| * | ACB122 | 2,950,166 | 0 | C | G | 56.2% | 4.7 / 16.6 | 16 | intergenic (+64/‑132) | spuC_2/puuC_1 | Putrescine‑‑pyruvate aminotransferase/NADP/NAD‑dependent aldehyde dehydrogenase PuuC |
| * | ACB122 | 5,223,159 | 0 | G | C | 55.6% | ‑4.2 / 16.2 | 27 | intergenic (‑133/+43) | cntO_7/CJ019_04917 | Metal‑pseudopaline receptor CntO/hypothetical protein |
| * | ACB122 | 4,954,912 | 0 | T | G | 54.5% | 6.1 / 11.2 | 11 | intergenic (‑129/+135) | fliE/atoC_3 | Flagellar hook‑basal body complex protein FliE/Regulatory protein AtoC |
| * | ACB122 | 790,007 | 0 | T | G | 53.8% | 1.5 / 15.4 | 26 | intergenic (+159/‑31) | CJ019_00751/CJ019_00752 | hypothetical protein/hypothetical protein |
| * | ACB122 | 1,686,856 | 0 | T | G | 53.3% | 4.8 / 11.5 | 15 | L90R (CTG→CGG) | CJ019_01584 | hypothetical protein |
| * | ACB122 | 4,874,709 | 0 | A | C | 53.1% | 4.6 / 18.1 | 32 | intergenic (+13/‑174) | CJ019_04568/uacT_1 | hypothetical protein/Uric acid transporter UacT |
| * | ACB122 | 1,288,041 | 0 | T | G | 52.4% | 8.2 / 17.6 | 21 | intergenic (+4/+66) | slyB/nhaA_1 | Outer membrane lipoprotein SlyB/Na( )/H( ) antiporter NhaA |
| * | ACB122 | 3,134,567 | 0 | T | G | 52.2% | 0.2 / 11.9 | 23 | L143V (TTG→GTG) | CJ019_02952 | hypothetical protein |
| * | ACB122 | 4,245,145 | 0 | A | C | 51.8% | 7.1 / 19.5 | 29 | L178R (CTG→CGG) | CJ019_03982 | Crotonyl‑CoA hydratase |
| * | ACB122 | 4,135,607 | 0 | A | C | 50.0% | 8.7 / 10.9 | 39 | Q32P (CAG→CCG) | tgnC | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| * | ACB122 | 2,938,239 | 0 | A | C | 46.7% | 6.8 / 10.8 | 30 | K537N (AAA→AAC) | pqiB | Intermembrane transport protein PqiB |
| * | ACB122 | 1,524,728 | 0 | T | G | 43.6% | 22.1 / 12.7 | 39 | P68P (CCA→CCC) | CJ019_01439 | hypothetical protein |
| * | ACB122 | 5,223,164 | 0 | T | C | 38.1% | ‑1.1 / 11.3 | 27 | intergenic (‑138/+38) | cntO_7/CJ019_04917 | Metal‑pseudopaline receptor CntO/hypothetical protein |
| * | ACB122 | 4,277,043 | 0 | T | G | 37.9% | 21.5 / 11.9 | 29 | G278G (GGT→GGG) | hbd | 3‑hydroxybutyryl‑CoA dehydrogenase |
| * | ACB122 | 3,586,404 | 0 | A | G | 37.0% | 26.9 / 10.3 | 32 | D128G (GAT→GGT) | CJ019_03399 | hypothetical protein |
| * | ACB122 | 3,047,217 | 0 | C | G | 31.7% | 86.5 / 11.1 | 45 | L122L (CTG→CTC) | CJ019_02862 | hypothetical protein |
| * | ACB122 | 1,084,265 | 0 | T | G | 31.4% | 105.1 / 14.3 | 71 | R68R (CGT→CGG) | sodB_2 | Superoxide dismutase [Mn/Fe] |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | = 2934029 | 45 (0.750) | 7 (0.120) | 6/250 | 4.7 | 11.4% | coding (204/912 nt) | gltC_3 | HTH‑type transcriptional regulator GltC |
| ? | ACB122 | 3005553 = | 64 (1.080) | coding (1557/1614 nt) | bcsG | Cellulose biosynthesis protein BcsG | |||||